Top 10 genes with highest correlation to Rv3451/cut3:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2880c/- | (cc=0.4828) | info on Rv2880c/- |
| Rv3504/fadE26 | (cc=0.4808) | info on Rv3504/fadE26 |
| Rv2306A/- | (cc=0.4693) | info on Rv2306A/- |
| Rv2658c/- | (cc=0.4631) | info on Rv2658c/- |
| Rv2628/- | (cc=0.4501) | info on Rv2628/- |
| Rv2679/echA15 | (cc=0.4496) | info on Rv2679/echA15 |
| Rv0978c/PE_PGRS17 | (cc=0.4427) | info on Rv0978c/PE_PGRS17 |
| Rv1670/- | (cc=0.4423) | info on Rv1670/- |
| Rv0968/- | (cc=0.4364) | info on Rv0968/- |
| Rv0073/- | (cc=0.4339) | info on Rv0073/- |
Correlation of Rv3451/cut3 with Rv2679/echA15
Normalized LFCs for Rv3451/cut3:
(description and provenance of datasets)
| Rv3451/cut3 | Rv2679/echA15 | |
| Fe_supp_jason_reseq | 0.147 | -0.857 |
| low_pH_jason_reseq | -0.683 | -1.198 |
| NO_jason_reseq | 0.326 | 1.142 |
| B6_jason_reseq | 0.145 | -0.225 |
| MHCII_jason_reseq | 0.496 | 0.652 |
| Isoniazid02 | -0.822 | -2.239 |
| Rifampicin4 | 0.13 | 0.214 |
| Ethambutol3 | -0.68 | -1.268 |
| Meropenem3 | -0.811 | -1.438 |
| Vancomycin16 | -0.594 | -0.873 |
| Rv2680_day32 | 0.388 | 0.16 |
| H37Rv_KO_MarP | 0.433 | 0.085 |
| hypoxia_3wks | 0.159 | -0.319 |
| hypoxia_6wks | -0.76 | -0.66 |
| glycerol | 0.451 | 0.48 |
| cholesterol | 0.083 | 0.102 |
| AJ | 0.37 | 0.388 |
| Bibs02 | 0.997 | -0.71 |
| Bibs02c | 0.574 | 0.1 |
| BL6 | 0.049 | 0.269 |
| BL6a | -0.022 | -0.696 |
| BXD01 | -0.2 | 0.183 |
| BXD010 | -0.432 | -0.586 |
| BXD011 | -0.35 | 0.013 |
| BXD03 | 0.015 | -0.669 |
| BXD04 | -0.316 | -0.318 |
| BXD05 | -0.156 | -0.124 |
| BXD06 | -0.398 | -0.331 |
| BXD07 | 0.144 | 0.032 |
| BXD08 | -0.568 | 0.514 |
| BXD09 | -0.239 | -0.61 |
| CAST | -0.017 | -0.445 |
| CCcont | -0.945 | 0.019 |
| DS01 | 0.39 | -0.12 |
| DS02 | -0.361 | -0.347 |
| DS04 | 0.344 | 0.201 |
| DS0c | 0.13 | -0.925 |
| GP01 | 0.354 | 0.265 |
| GP02 | -0.031 | 1.004 |
| GP0c | -0.2 | 0.0 |
| NOD | 0.547 | 0.41 |
| NZO | -0.022 | 0.202 |
| PWK | 0.318 | 0.32 |
| H37Rv_KO_CtpC | -0.162 | 0.118 |
| H37Rv_KO_CtpD | 0.53 | 1.037 |
| H37Rv_KO_Rv1272 | -0.793 | -0.179 |
| H37Rv_KO_SugABC | -0.052 | -0.594 |
| H37Rv_KO_MbtN | -0.793 | 0.237 |
| Trans05 | -0.58 | -0.359 |
| macrophage_unactivated | -0.294 | -0.994 |
| IL1 | -0.101 | 0.329 |
| Rapamycin | 0.509 | 0.377 |
| Tcell | -0.89 | -0.267 |
| GMCSF | 0.554 | 0.692 |
| IFNab | -0.07 | 0.054 |
| IFNg | -0.315 | -0.168 |
| IFNg_GMCSF1 | -0.273 | 0.258 |
| Rv1432_day32 | 0.253 | 0.096 |
| Rv1565c_day32 | -1.115 | -0.321 |
| secA2_input | -0.128 | 0.603 |
| delta_Rv3594 | -0.62 | -0.387 |
| delta_Rv3717 | -0.526 | 0.248 |
| delta_Rv3811 | -1.112 | -1.472 |
| delta_Rv0954 | 0.08 | -0.076 |
| PonA1 | -0.075 | -0.062 |
| EccD1_KO | 0.332 | -0.454 |
| EspI_KO | 0.511 | 0.157 |
| PE35_KO | 0.0 | -0.362 |
| PPE68_KO | 0.246 | 0.118 |
| glycerol2 | -0.254 | 0.387 |
| lignocerate | -0.684 | 0.716 |
| oleate | 0.5 | 0.795 |
| phosphatidylcholine | -0.153 | 0.794 |
| acetate | -0.72 | 0.073 |
| glucAc | -1.146 | 0.036 |
| Rv0950ko | 0.087 | 0.627 |
| Rv1096ko | 0.069 | 0.609 |
| Rv3684ko | -0.193 | 0.544 |
| delta_otsA_trehalose | 0.731 | 1.186 |