Top 10 genes with highest correlation to Rv3451/cut3:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2880c/- | (cc=0.4828) | info on Rv2880c/- |
| Rv3504/fadE26 | (cc=0.4808) | info on Rv3504/fadE26 |
| Rv2306A/- | (cc=0.4693) | info on Rv2306A/- |
| Rv2658c/- | (cc=0.4631) | info on Rv2658c/- |
| Rv2628/- | (cc=0.4501) | info on Rv2628/- |
| Rv2679/echA15 | (cc=0.4496) | info on Rv2679/echA15 |
| Rv0978c/PE_PGRS17 | (cc=0.4427) | info on Rv0978c/PE_PGRS17 |
| Rv1670/- | (cc=0.4423) | info on Rv1670/- |
| Rv0968/- | (cc=0.4364) | info on Rv0968/- |
| Rv0073/- | (cc=0.4339) | info on Rv0073/- |
Correlation of Rv3451/cut3 with Rv0073/-
Normalized LFCs for Rv3451/cut3:
(description and provenance of datasets)
| Rv3451/cut3 | Rv0073/- | |
| Fe_supp_jason_reseq | 0.147 | -0.133 |
| low_pH_jason_reseq | -0.683 | -0.422 |
| NO_jason_reseq | 0.326 | -0.761 |
| B6_jason_reseq | 0.145 | 0.152 |
| MHCII_jason_reseq | 0.496 | -0.392 |
| Isoniazid02 | -0.822 | -1.654 |
| Rifampicin4 | 0.13 | -0.801 |
| Ethambutol3 | -0.68 | -0.55 |
| Meropenem3 | -0.811 | -1.17 |
| Vancomycin16 | -0.594 | -1.141 |
| Rv2680_day32 | 0.388 | 0.489 |
| H37Rv_KO_MarP | 0.433 | 0.0 |
| hypoxia_3wks | 0.159 | -0.203 |
| hypoxia_6wks | -0.76 | -0.244 |
| glycerol | 0.451 | 0.812 |
| cholesterol | 0.083 | 0.242 |
| AJ | 0.37 | -0.076 |
| Bibs02 | 0.997 | 0.755 |
| Bibs02c | 0.574 | 0.915 |
| BL6 | 0.049 | 0.766 |
| BL6a | -0.022 | 0.042 |
| BXD01 | -0.2 | 0.451 |
| BXD010 | -0.432 | 0.271 |
| BXD011 | -0.35 | -0.245 |
| BXD03 | 0.015 | 0.36 |
| BXD04 | -0.316 | 0.559 |
| BXD05 | -0.156 | 0.599 |
| BXD06 | -0.398 | 0.259 |
| BXD07 | 0.144 | 0.015 |
| BXD08 | -0.568 | -0.198 |
| BXD09 | -0.239 | 0.235 |
| CAST | -0.017 | 0.143 |
| CCcont | -0.945 | -0.04 |
| DS01 | 0.39 | 1.3 |
| DS02 | -0.361 | 0.553 |
| DS04 | 0.344 | 0.41 |
| DS0c | 0.13 | 0.903 |
| GP01 | 0.354 | 0.275 |
| GP02 | -0.031 | 0.285 |
| GP0c | -0.2 | -0.336 |
| NOD | 0.547 | 0.395 |
| NZO | -0.022 | 0.306 |
| PWK | 0.318 | 0.796 |
| H37Rv_KO_CtpC | -0.162 | 0.467 |
| H37Rv_KO_CtpD | 0.53 | 1.33 |
| H37Rv_KO_Rv1272 | -0.793 | 0.816 |
| H37Rv_KO_SugABC | -0.052 | -0.049 |
| H37Rv_KO_MbtN | -0.793 | -0.225 |
| Trans05 | -0.58 | 1.018 |
| macrophage_unactivated | -0.294 | 0.208 |
| IL1 | -0.101 | 0.08 |
| Rapamycin | 0.509 | 0.338 |
| Tcell | -0.89 | 0.277 |
| GMCSF | 0.554 | -0.256 |
| IFNab | -0.07 | -0.187 |
| IFNg | -0.315 | -0.241 |
| IFNg_GMCSF1 | -0.273 | -0.512 |
| Rv1432_day32 | 0.253 | -0.489 |
| Rv1565c_day32 | -1.115 | -0.092 |
| secA2_input | -0.128 | 0.269 |
| delta_Rv3594 | -0.62 | -0.17 |
| delta_Rv3717 | -0.526 | -0.341 |
| delta_Rv3811 | -1.112 | -0.439 |
| delta_Rv0954 | 0.08 | -0.134 |
| PonA1 | -0.075 | -0.008 |
| EccD1_KO | 0.332 | -0.102 |
| EspI_KO | 0.511 | 0.268 |
| PE35_KO | 0.0 | 0.257 |
| PPE68_KO | 0.246 | 0.531 |
| glycerol2 | -0.254 | 0.073 |
| lignocerate | -0.684 | -0.323 |
| oleate | 0.5 | 0.336 |
| phosphatidylcholine | -0.153 | 0.022 |
| acetate | -0.72 | -1.034 |
| glucAc | -1.146 | -0.98 |
| Rv0950ko | 0.087 | 0.271 |
| Rv1096ko | 0.069 | 0.305 |
| Rv3684ko | -0.193 | -0.698 |
| delta_otsA_trehalose | 0.731 | -0.232 |