Top 10 genes with highest correlation to Rv3451/cut3:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2880c/- | (cc=0.4828) | info on Rv2880c/- |
| Rv3504/fadE26 | (cc=0.4808) | info on Rv3504/fadE26 |
| Rv2306A/- | (cc=0.4693) | info on Rv2306A/- |
| Rv2658c/- | (cc=0.4631) | info on Rv2658c/- |
| Rv2628/- | (cc=0.4501) | info on Rv2628/- |
| Rv2679/echA15 | (cc=0.4496) | info on Rv2679/echA15 |
| Rv0978c/PE_PGRS17 | (cc=0.4427) | info on Rv0978c/PE_PGRS17 |
| Rv1670/- | (cc=0.4423) | info on Rv1670/- |
| Rv0968/- | (cc=0.4364) | info on Rv0968/- |
| Rv0073/- | (cc=0.4339) | info on Rv0073/- |
Correlation of Rv3451/cut3 with Rv2306A/-
Normalized LFCs for Rv3451/cut3:
(description and provenance of datasets)
| Rv3451/cut3 | Rv2306A/- | |
| Fe_supp_jason_reseq | 0.147 | 0.137 |
| low_pH_jason_reseq | -0.683 | -0.84 |
| NO_jason_reseq | 0.326 | -0.181 |
| B6_jason_reseq | 0.145 | 0.072 |
| MHCII_jason_reseq | 0.496 | 0.82 |
| Isoniazid02 | -0.822 | -2.04 |
| Rifampicin4 | 0.13 | 0.704 |
| Ethambutol3 | -0.68 | -0.251 |
| Meropenem3 | -0.811 | -2.001 |
| Vancomycin16 | -0.594 | -0.775 |
| Rv2680_day32 | 0.388 | -0.251 |
| H37Rv_KO_MarP | 0.433 | -0.167 |
| hypoxia_3wks | 0.159 | 0.116 |
| hypoxia_6wks | -0.76 | 0.238 |
| glycerol | 0.451 | 0.648 |
| cholesterol | 0.083 | -0.308 |
| AJ | 0.37 | -0.35 |
| Bibs02 | 0.997 | 0.351 |
| Bibs02c | 0.574 | 0.044 |
| BL6 | 0.049 | -0.773 |
| BL6a | -0.022 | -1.02 |
| BXD01 | -0.2 | -1.194 |
| BXD010 | -0.432 | -1.663 |
| BXD011 | -0.35 | -1.074 |
| BXD03 | 0.015 | -0.844 |
| BXD04 | -0.316 | -1.122 |
| BXD05 | -0.156 | -1.427 |
| BXD06 | -0.398 | -0.841 |
| BXD07 | 0.144 | -0.984 |
| BXD08 | -0.568 | -0.991 |
| BXD09 | -0.239 | -1.11 |
| CAST | -0.017 | -0.442 |
| CCcont | -0.945 | -1.093 |
| DS01 | 0.39 | 0.77 |
| DS02 | -0.361 | 0.405 |
| DS04 | 0.344 | 0.902 |
| DS0c | 0.13 | 0.442 |
| GP01 | 0.354 | 0.402 |
| GP02 | -0.031 | 0.034 |
| GP0c | -0.2 | 0.234 |
| NOD | 0.547 | -0.722 |
| NZO | -0.022 | -0.16 |
| PWK | 0.318 | 0.466 |
| H37Rv_KO_CtpC | -0.162 | -0.66 |
| H37Rv_KO_CtpD | 0.53 | -1.238 |
| H37Rv_KO_Rv1272 | -0.793 | -0.907 |
| H37Rv_KO_SugABC | -0.052 | -0.789 |
| H37Rv_KO_MbtN | -0.793 | -0.611 |
| Trans05 | -0.58 | -0.427 |
| macrophage_unactivated | -0.294 | -0.382 |
| IL1 | -0.101 | -1.261 |
| Rapamycin | 0.509 | -0.672 |
| Tcell | -0.89 | -1.3 |
| GMCSF | 0.554 | -0.607 |
| IFNab | -0.07 | -0.837 |
| IFNg | -0.315 | -0.676 |
| IFNg_GMCSF1 | -0.273 | -0.795 |
| Rv1432_day32 | 0.253 | 0.379 |
| Rv1565c_day32 | -1.115 | -0.526 |
| secA2_input | -0.128 | -0.57 |
| delta_Rv3594 | -0.62 | -0.323 |
| delta_Rv3717 | -0.526 | -0.369 |
| delta_Rv3811 | -1.112 | 0.076 |
| delta_Rv0954 | 0.08 | -0.665 |
| PonA1 | -0.075 | -0.989 |
| EccD1_KO | 0.332 | 0.954 |
| EspI_KO | 0.511 | 0.955 |
| PE35_KO | 0.0 | 0.767 |
| PPE68_KO | 0.246 | 0.554 |
| glycerol2 | -0.254 | -0.059 |
| lignocerate | -0.684 | -0.201 |
| oleate | 0.5 | 0.717 |
| phosphatidylcholine | -0.153 | 0.196 |
| acetate | -0.72 | 0.04 |
| glucAc | -1.146 | -0.351 |
| Rv0950ko | 0.087 | 0.501 |
| Rv1096ko | 0.069 | -0.287 |
| Rv3684ko | -0.193 | 0.606 |
| delta_otsA_trehalose | 0.731 | 1.441 |