Top 10 genes with highest correlation to Rv3451/cut3:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2880c/- | (cc=0.4828) | info on Rv2880c/- |
| Rv3504/fadE26 | (cc=0.4808) | info on Rv3504/fadE26 |
| Rv2306A/- | (cc=0.4693) | info on Rv2306A/- |
| Rv2658c/- | (cc=0.4631) | info on Rv2658c/- |
| Rv2628/- | (cc=0.4501) | info on Rv2628/- |
| Rv2679/echA15 | (cc=0.4496) | info on Rv2679/echA15 |
| Rv0978c/PE_PGRS17 | (cc=0.4427) | info on Rv0978c/PE_PGRS17 |
| Rv1670/- | (cc=0.4423) | info on Rv1670/- |
| Rv0968/- | (cc=0.4364) | info on Rv0968/- |
| Rv0073/- | (cc=0.4339) | info on Rv0073/- |
Correlation of Rv3451/cut3 with Rv2628/-
Normalized LFCs for Rv3451/cut3:
(description and provenance of datasets)
| Rv3451/cut3 | Rv2628/- | |
| Fe_supp_jason_reseq | 0.147 | -1.787 |
| low_pH_jason_reseq | -0.683 | 0.023 |
| NO_jason_reseq | 0.326 | 1.62 |
| B6_jason_reseq | 0.145 | 1.163 |
| MHCII_jason_reseq | 0.496 | 1.063 |
| Isoniazid02 | -0.822 | -3.054 |
| Rifampicin4 | 0.13 | -1.481 |
| Ethambutol3 | -0.68 | -2.505 |
| Meropenem3 | -0.811 | -2.876 |
| Vancomycin16 | -0.594 | -2.274 |
| Rv2680_day32 | 0.388 | 0.108 |
| H37Rv_KO_MarP | 0.433 | 0.27 |
| hypoxia_3wks | 0.159 | -0.849 |
| hypoxia_6wks | -0.76 | -1.888 |
| glycerol | 0.451 | -0.363 |
| cholesterol | 0.083 | -0.118 |
| AJ | 0.37 | 0.543 |
| Bibs02 | 0.997 | 1.574 |
| Bibs02c | 0.574 | -0.605 |
| BL6 | 0.049 | -0.818 |
| BL6a | -0.022 | -1.606 |
| BXD01 | -0.2 | -1.263 |
| BXD010 | -0.432 | -0.446 |
| BXD011 | -0.35 | -0.744 |
| BXD03 | 0.015 | -0.251 |
| BXD04 | -0.316 | -0.964 |
| BXD05 | -0.156 | -2.024 |
| BXD06 | -0.398 | -0.619 |
| BXD07 | 0.144 | -1.293 |
| BXD08 | -0.568 | -1.87 |
| BXD09 | -0.239 | -1.85 |
| CAST | -0.017 | -0.199 |
| CCcont | -0.945 | -1.891 |
| DS01 | 0.39 | 0.068 |
| DS02 | -0.361 | 0.641 |
| DS04 | 0.344 | -0.55 |
| DS0c | 0.13 | 0.482 |
| GP01 | 0.354 | -1.086 |
| GP02 | -0.031 | 0.595 |
| GP0c | -0.2 | -0.612 |
| NOD | 0.547 | -0.973 |
| NZO | -0.022 | 0.631 |
| PWK | 0.318 | 0.421 |
| H37Rv_KO_CtpC | -0.162 | -0.803 |
| H37Rv_KO_CtpD | 0.53 | -1.584 |
| H37Rv_KO_Rv1272 | -0.793 | -2.273 |
| H37Rv_KO_SugABC | -0.052 | -1.94 |
| H37Rv_KO_MbtN | -0.793 | -2.276 |
| Trans05 | -0.58 | -1.235 |
| macrophage_unactivated | -0.294 | -0.451 |
| IL1 | -0.101 | -0.258 |
| Rapamycin | 0.509 | -2.176 |
| Tcell | -0.89 | -0.228 |
| GMCSF | 0.554 | 2.878 |
| IFNab | -0.07 | -1.17 |
| IFNg | -0.315 | -0.091 |
| IFNg_GMCSF1 | -0.273 | -0.569 |
| Rv1432_day32 | 0.253 | 0.941 |
| Rv1565c_day32 | -1.115 | 0.736 |
| secA2_input | -0.128 | -0.059 |
| delta_Rv3594 | -0.62 | 0.668 |
| delta_Rv3717 | -0.526 | -0.82 |
| delta_Rv3811 | -1.112 | 0.064 |
| delta_Rv0954 | 0.08 | -0.842 |
| PonA1 | -0.075 | -0.753 |
| EccD1_KO | 0.332 | 3.088 |
| EspI_KO | 0.511 | 1.668 |
| PE35_KO | 0.0 | 1.706 |
| PPE68_KO | 0.246 | 2.038 |
| glycerol2 | -0.254 | -0.614 |
| lignocerate | -0.684 | -0.822 |
| oleate | 0.5 | 0.414 |
| phosphatidylcholine | -0.153 | -0.35 |
| acetate | -0.72 | -1.686 |
| glucAc | -1.146 | -1.02 |
| Rv0950ko | 0.087 | 0.271 |
| Rv1096ko | 0.069 | 0.401 |
| Rv3684ko | -0.193 | -0.652 |
| delta_otsA_trehalose | 0.731 | -0.331 |