Top 10 genes with highest correlation to Rv3438/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3850/- | (cc=0.5835) | info on Rv3850/- |
| Rv3855/ethR | (cc=0.5221) | info on Rv3855/ethR |
| Rv0821c/phoY2 | (cc=0.5151) | info on Rv0821c/phoY2 |
| Rv1633/uvrB | (cc=0.4806) | info on Rv1633/uvrB |
| Rv3045/adhC | (cc=0.4746) | info on Rv3045/adhC |
| Rv1502/- | (cc=0.4725) | info on Rv1502/- |
| Rv1100/- | (cc=0.4633) | info on Rv1100/- |
| Rv2335/cysE | (cc=0.4584) | info on Rv2335/cysE |
| Rv2299c/htpG | (cc=0.4437) | info on Rv2299c/htpG |
| Rv0892/- | (cc=0.4388) | info on Rv0892/- |
Correlation of Rv3438/- with Rv3855/ethR
Normalized LFCs for Rv3438/-:
(description and provenance of datasets)
| Rv3438/- | Rv3855/ethR | |
| Fe_supp_jason_reseq | 1.678 | 1.219 |
| low_pH_jason_reseq | 1.215 | 2.111 |
| NO_jason_reseq | -2.084 | -6.0 |
| B6_jason_reseq | 1.845 | 0.077 |
| MHCII_jason_reseq | 0.053 | -0.624 |
| Isoniazid02 | -0.914 | -0.982 |
| Rifampicin4 | -0.236 | -0.13 |
| Ethambutol3 | -0.471 | 0.316 |
| Meropenem3 | -1.148 | -0.058 |
| Vancomycin16 | 0.324 | 0.324 |
| Rv2680_day32 | 0.593 | -0.235 |
| H37Rv_KO_MarP | -0.409 | 0.937 |
| hypoxia_3wks | -0.104 | -1.065 |
| hypoxia_6wks | -2.036 | -1.539 |
| glycerol | 0.073 | 1.147 |
| cholesterol | 1.403 | 0.823 |
| AJ | -0.222 | -0.904 |
| Bibs02 | 0.066 | -0.759 |
| Bibs02c | 0.925 | 0.27 |
| BL6 | 1.308 | 0.852 |
| BL6a | 1.706 | 0.917 |
| BXD01 | 0.622 | 0.56 |
| BXD010 | 2.112 | -0.669 |
| BXD011 | 1.087 | -0.044 |
| BXD03 | 1.843 | 1.047 |
| BXD04 | 1.397 | 0.586 |
| BXD05 | 1.159 | -0.491 |
| BXD06 | 0.917 | -0.554 |
| BXD07 | 1.269 | 0.114 |
| BXD08 | 0.696 | -0.17 |
| BXD09 | 1.069 | -0.049 |
| CAST | 1.87 | 0.622 |
| CCcont | 1.041 | 0.962 |
| DS01 | -0.476 | -0.168 |
| DS02 | -0.298 | -0.692 |
| DS04 | 0.358 | 0.19 |
| DS0c | 0.154 | 0.614 |
| GP01 | -1.608 | 0.58 |
| GP02 | -1.105 | -0.122 |
| GP0c | -0.918 | -0.413 |
| NOD | 0.737 | 0.076 |
| NZO | -0.637 | -0.777 |
| PWK | 0.45 | -0.25 |
| H37Rv_KO_CtpC | -0.061 | -0.717 |
| H37Rv_KO_CtpD | 1.161 | 1.605 |
| H37Rv_KO_Rv1272 | 0.657 | -1.375 |
| H37Rv_KO_SugABC | 0.496 | -0.292 |
| H37Rv_KO_MbtN | 0.352 | -0.598 |
| Trans05 | 0.822 | 0.087 |
| macrophage_unactivated | -0.259 | -0.713 |
| IL1 | 0.733 | -0.872 |
| Rapamycin | -0.252 | -1.513 |
| Tcell | 0.0 | -0.254 |
| GMCSF | 1.827 | -1.03 |
| IFNab | 0.233 | -0.683 |
| IFNg | 0.935 | -0.724 |
| IFNg_GMCSF1 | 1.1 | -0.924 |
| Rv1432_day32 | -1.182 | -2.109 |
| Rv1565c_day32 | 0.482 | 0.359 |
| secA2_input | 0.598 | -0.351 |
| delta_Rv3594 | -0.711 | -0.852 |
| delta_Rv3717 | -0.104 | -1.787 |
| delta_Rv3811 | -0.476 | -1.924 |
| delta_Rv0954 | 0.129 | -0.093 |
| PonA1 | 0.521 | 0.016 |
| EccD1_KO | -1.22 | 0.385 |
| EspI_KO | -0.029 | -0.482 |
| PE35_KO | 0.403 | -0.111 |
| PPE68_KO | -0.698 | -0.608 |
| glycerol2 | -0.722 | -4.603 |
| lignocerate | -0.544 | -4.506 |
| oleate | -1.874 | -2.48 |
| phosphatidylcholine | -0.923 | -5.472 |
| acetate | -0.437 | -0.206 |
| glucAc | 0.501 | -0.711 |
| Rv0950ko | 0.479 | 0.235 |
| Rv1096ko | 0.35 | -0.06 |
| Rv3684ko | -0.187 | -0.033 |
| delta_otsA_trehalose | 0.85 | 1.297 |