Top 10 genes with highest correlation to Rv3438/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3850/- | (cc=0.5835) | info on Rv3850/- |
| Rv3855/ethR | (cc=0.5221) | info on Rv3855/ethR |
| Rv0821c/phoY2 | (cc=0.5151) | info on Rv0821c/phoY2 |
| Rv1633/uvrB | (cc=0.4806) | info on Rv1633/uvrB |
| Rv3045/adhC | (cc=0.4746) | info on Rv3045/adhC |
| Rv1502/- | (cc=0.4725) | info on Rv1502/- |
| Rv1100/- | (cc=0.4633) | info on Rv1100/- |
| Rv2335/cysE | (cc=0.4584) | info on Rv2335/cysE |
| Rv2299c/htpG | (cc=0.4437) | info on Rv2299c/htpG |
| Rv0892/- | (cc=0.4388) | info on Rv0892/- |
Correlation of Rv3438/- with Rv0821c/phoY2
Normalized LFCs for Rv3438/-:
(description and provenance of datasets)
| Rv3438/- | Rv0821c/phoY2 | |
| Fe_supp_jason_reseq | 1.678 | -0.185 |
| low_pH_jason_reseq | 1.215 | 0.641 |
| NO_jason_reseq | -2.084 | -0.937 |
| B6_jason_reseq | 1.845 | 0.493 |
| MHCII_jason_reseq | 0.053 | -0.554 |
| Isoniazid02 | -0.914 | -2.653 |
| Rifampicin4 | -0.236 | -1.267 |
| Ethambutol3 | -0.471 | -1.018 |
| Meropenem3 | -1.148 | -0.412 |
| Vancomycin16 | 0.324 | -0.281 |
| Rv2680_day32 | 0.593 | 1.524 |
| H37Rv_KO_MarP | -0.409 | -1.04 |
| hypoxia_3wks | -0.104 | -6.0 |
| hypoxia_6wks | -2.036 | -5.003 |
| glycerol | 0.073 | -0.55 |
| cholesterol | 1.403 | 0.091 |
| AJ | -0.222 | -0.983 |
| Bibs02 | 0.066 | -0.658 |
| Bibs02c | 0.925 | 0.258 |
| BL6 | 1.308 | 1.192 |
| BL6a | 1.706 | 1.65 |
| BXD01 | 0.622 | 1.432 |
| BXD010 | 2.112 | 2.526 |
| BXD011 | 1.087 | 1.606 |
| BXD03 | 1.843 | 1.981 |
| BXD04 | 1.397 | 2.825 |
| BXD05 | 1.159 | 2.21 |
| BXD06 | 0.917 | 2.552 |
| BXD07 | 1.269 | 1.893 |
| BXD08 | 0.696 | 1.546 |
| BXD09 | 1.069 | 2.406 |
| CAST | 1.87 | 1.39 |
| CCcont | 1.041 | 1.214 |
| DS01 | -0.476 | -0.388 |
| DS02 | -0.298 | 0.808 |
| DS04 | 0.358 | 0.083 |
| DS0c | 0.154 | 0.823 |
| GP01 | -1.608 | 1.488 |
| GP02 | -1.105 | 1.192 |
| GP0c | -0.918 | 0.422 |
| NOD | 0.737 | -0.342 |
| NZO | -0.637 | -1.878 |
| PWK | 0.45 | -0.452 |
| H37Rv_KO_CtpC | -0.061 | 0.93 |
| H37Rv_KO_CtpD | 1.161 | -0.071 |
| H37Rv_KO_Rv1272 | 0.657 | 1.838 |
| H37Rv_KO_SugABC | 0.496 | 0.178 |
| H37Rv_KO_MbtN | 0.352 | -0.388 |
| Trans05 | 0.822 | 1.268 |
| macrophage_unactivated | -0.259 | -0.748 |
| IL1 | 0.733 | 0.264 |
| Rapamycin | -0.252 | -1.307 |
| Tcell | 0.0 | 0.248 |
| GMCSF | 1.827 | 1.861 |
| IFNab | 0.233 | 0.257 |
| IFNg | 0.935 | 2.261 |
| IFNg_GMCSF1 | 1.1 | 2.231 |
| Rv1432_day32 | -1.182 | 1.763 |
| Rv1565c_day32 | 0.482 | -0.25 |
| secA2_input | 0.598 | 1.34 |
| delta_Rv3594 | -0.711 | -0.422 |
| delta_Rv3717 | -0.104 | 0.092 |
| delta_Rv3811 | -0.476 | -0.294 |
| delta_Rv0954 | 0.129 | -2.771 |
| PonA1 | 0.521 | -2.17 |
| EccD1_KO | -1.22 | -1.177 |
| EspI_KO | -0.029 | -2.053 |
| PE35_KO | 0.403 | -1.269 |
| PPE68_KO | -0.698 | -2.348 |
| glycerol2 | -0.722 | 0.102 |
| lignocerate | -0.544 | 0.6 |
| oleate | -1.874 | -1.019 |
| phosphatidylcholine | -0.923 | 0.045 |
| acetate | -0.437 | 0.677 |
| glucAc | 0.501 | 0.533 |
| Rv0950ko | 0.479 | -1.342 |
| Rv1096ko | 0.35 | 0.199 |
| Rv3684ko | -0.187 | 0.514 |
| delta_otsA_trehalose | 0.85 | 0.35 |