Top 10 genes with highest correlation to Rv3438/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3850/- | (cc=0.5835) | info on Rv3850/- |
| Rv3855/ethR | (cc=0.5221) | info on Rv3855/ethR |
| Rv0821c/phoY2 | (cc=0.5151) | info on Rv0821c/phoY2 |
| Rv1633/uvrB | (cc=0.4806) | info on Rv1633/uvrB |
| Rv3045/adhC | (cc=0.4746) | info on Rv3045/adhC |
| Rv1502/- | (cc=0.4725) | info on Rv1502/- |
| Rv1100/- | (cc=0.4633) | info on Rv1100/- |
| Rv2335/cysE | (cc=0.4584) | info on Rv2335/cysE |
| Rv2299c/htpG | (cc=0.4437) | info on Rv2299c/htpG |
| Rv0892/- | (cc=0.4388) | info on Rv0892/- |
Correlation of Rv3438/- with Rv2335/cysE
Normalized LFCs for Rv3438/-:
(description and provenance of datasets)
| Rv3438/- | Rv2335/cysE | |
| Fe_supp_jason_reseq | 1.678 | 3.268 |
| low_pH_jason_reseq | 1.215 | 3.885 |
| NO_jason_reseq | -2.084 | -1.935 |
| B6_jason_reseq | 1.845 | 1.467 |
| MHCII_jason_reseq | 0.053 | -0.842 |
| Isoniazid02 | -0.914 | 2.714 |
| Rifampicin4 | -0.236 | 0.523 |
| Ethambutol3 | -0.471 | 1.018 |
| Meropenem3 | -1.148 | 0.0 |
| Vancomycin16 | 0.324 | 1.73 |
| Rv2680_day32 | 0.593 | 0.0 |
| H37Rv_KO_MarP | -0.409 | 1.274 |
| hypoxia_3wks | -0.104 | -1.36 |
| hypoxia_6wks | -2.036 | -0.518 |
| glycerol | 0.073 | 0.0 |
| cholesterol | 1.403 | 2.618 |
| AJ | -0.222 | 1.324 |
| Bibs02 | 0.066 | -0.183 |
| Bibs02c | 0.925 | -0.209 |
| BL6 | 1.308 | 1.125 |
| BL6a | 1.706 | 1.527 |
| BXD01 | 0.622 | 2.557 |
| BXD010 | 2.112 | 1.915 |
| BXD011 | 1.087 | 1.615 |
| BXD03 | 1.843 | 1.675 |
| BXD04 | 1.397 | 2.008 |
| BXD05 | 1.159 | 1.154 |
| BXD06 | 0.917 | 2.457 |
| BXD07 | 1.269 | 1.675 |
| BXD08 | 0.696 | 1.394 |
| BXD09 | 1.069 | 1.146 |
| CAST | 1.87 | 4.201 |
| CCcont | 1.041 | 1.565 |
| DS01 | -0.476 | 0.216 |
| DS02 | -0.298 | 0.704 |
| DS04 | 0.358 | 0.0 |
| DS0c | 0.154 | -0.217 |
| GP01 | -1.608 | -0.099 |
| GP02 | -1.105 | -0.083 |
| GP0c | -0.918 | -0.13 |
| NOD | 0.737 | 1.282 |
| NZO | -0.637 | 1.537 |
| PWK | 0.45 | 2.646 |
| H37Rv_KO_CtpC | -0.061 | 0.148 |
| H37Rv_KO_CtpD | 1.161 | 0.723 |
| H37Rv_KO_Rv1272 | 0.657 | 1.574 |
| H37Rv_KO_SugABC | 0.496 | -0.099 |
| H37Rv_KO_MbtN | 0.352 | 0.404 |
| Trans05 | 0.822 | 0.947 |
| macrophage_unactivated | -0.259 | -1.196 |
| IL1 | 0.733 | -1.124 |
| Rapamycin | -0.252 | 0.328 |
| Tcell | 0.0 | -0.785 |
| GMCSF | 1.827 | -1.001 |
| IFNab | 0.233 | -0.348 |
| IFNg | 0.935 | -1.013 |
| IFNg_GMCSF1 | 1.1 | -0.361 |
| Rv1432_day32 | -1.182 | 0.611 |
| Rv1565c_day32 | 0.482 | 2.631 |
| secA2_input | 0.598 | -1.296 |
| delta_Rv3594 | -0.711 | -2.348 |
| delta_Rv3717 | -0.104 | -3.335 |
| delta_Rv3811 | -0.476 | -3.324 |
| delta_Rv0954 | 0.129 | -0.667 |
| PonA1 | 0.521 | 0.537 |
| EccD1_KO | -1.22 | 1.694 |
| EspI_KO | -0.029 | 0.419 |
| PE35_KO | 0.403 | 2.269 |
| PPE68_KO | -0.698 | 2.188 |
| glycerol2 | -0.722 | -1.822 |
| lignocerate | -0.544 | -1.877 |
| oleate | -1.874 | -2.185 |
| phosphatidylcholine | -0.923 | -2.35 |
| acetate | -0.437 | 0.708 |
| glucAc | 0.501 | -0.199 |
| Rv0950ko | 0.479 | 1.143 |
| Rv1096ko | 0.35 | 1.541 |
| Rv3684ko | -0.187 | 2.577 |
| delta_otsA_trehalose | 0.85 | 0.468 |