Top 10 genes with highest correlation to Rv3427c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1116/- | (cc=0.5951) | info on Rv1116/- |
| Rv1870c/- | (cc=0.5796) | info on Rv1870c/- |
| Rv3398c/idsA1 | (cc=0.5704) | info on Rv3398c/idsA1 |
| Rv2929/- | (cc=0.5618) | info on Rv2929/- |
| Rv2430c/PPE41 | (cc=0.5584) | info on Rv2430c/PPE41 |
| Rv3150/nuoF | (cc=0.5377) | info on Rv3150/nuoF |
| Rv3151/nuoG | (cc=0.5375) | info on Rv3151/nuoG |
| Rv1664/pks9 | (cc=0.5372) | info on Rv1664/pks9 |
| Rv1505c/- | (cc=0.5355) | info on Rv1505c/- |
| Rv3759c/proX | (cc=0.5228) | info on Rv3759c/proX |
Correlation of Rv3427c/- with Rv1116/-
Normalized LFCs for Rv3427c/-:
(description and provenance of datasets)
| Rv3427c/- | Rv1116/- | |
| Fe_supp_jason_reseq | -0.259 | -0.079 |
| low_pH_jason_reseq | -0.207 | 1.563 |
| NO_jason_reseq | 1.242 | -0.937 |
| B6_jason_reseq | -0.662 | -0.775 |
| MHCII_jason_reseq | -0.637 | -2.185 |
| Isoniazid02 | 2.559 | -0.202 |
| Rifampicin4 | -0.712 | -0.793 |
| Ethambutol3 | 0.479 | -0.469 |
| Meropenem3 | 0.386 | -0.329 |
| Vancomycin16 | -0.669 | -0.544 |
| Rv2680_day32 | -0.635 | -3.002 |
| H37Rv_KO_MarP | 0.775 | 0.209 |
| hypoxia_3wks | -0.14 | 0.881 |
| hypoxia_6wks | -0.134 | 0.315 |
| glycerol | -1.164 | -2.319 |
| cholesterol | -0.29 | -1.265 |
| AJ | 0.178 | -0.866 |
| Bibs02 | -1.959 | -0.507 |
| Bibs02c | 1.29 | 1.479 |
| BL6 | 0.69 | 1.089 |
| BL6a | 1.758 | 3.068 |
| BXD01 | 1.382 | 1.975 |
| BXD010 | 0.609 | 3.315 |
| BXD011 | 1.398 | 2.491 |
| BXD03 | 1.506 | 2.737 |
| BXD04 | 3.265 | 2.569 |
| BXD05 | 0.944 | 2.73 |
| BXD06 | 1.389 | 2.452 |
| BXD07 | 0.889 | 2.972 |
| BXD08 | 1.776 | 2.685 |
| BXD09 | 1.233 | 2.084 |
| CAST | 0.052 | -0.859 |
| CCcont | 1.228 | 1.588 |
| DS01 | 1.122 | -0.352 |
| DS02 | -0.101 | -2.497 |
| DS04 | -0.233 | -1.405 |
| DS0c | -0.127 | -1.425 |
| GP01 | 1.584 | 2.097 |
| GP02 | -0.48 | -0.353 |
| GP0c | 0.511 | 2.178 |
| NOD | -0.926 | -0.623 |
| NZO | -0.857 | -2.29 |
| PWK | 0.404 | -1.563 |
| H37Rv_KO_CtpC | 1.186 | 3.593 |
| H37Rv_KO_CtpD | 1.478 | 1.121 |
| H37Rv_KO_Rv1272 | 1.503 | 1.482 |
| H37Rv_KO_SugABC | 0.586 | -0.321 |
| H37Rv_KO_MbtN | -0.747 | 1.349 |
| Trans05 | 1.292 | 1.761 |
| macrophage_unactivated | 0.849 | -1.727 |
| IL1 | 0.169 | -1.216 |
| Rapamycin | 0.463 | -0.414 |
| Tcell | -0.023 | -1.606 |
| GMCSF | 0.911 | -0.38 |
| IFNab | 0.435 | -0.46 |
| IFNg | 0.767 | -1.646 |
| IFNg_GMCSF1 | 0.474 | -0.723 |
| Rv1432_day32 | -0.229 | 0.0 |
| Rv1565c_day32 | 1.044 | -0.622 |
| secA2_input | -0.083 | 0.092 |
| delta_Rv3594 | -0.242 | -2.284 |
| delta_Rv3717 | -0.356 | -0.364 |
| delta_Rv3811 | -1.209 | 0.213 |
| delta_Rv0954 | -0.751 | -1.87 |
| PonA1 | -1.521 | -3.333 |
| EccD1_KO | 0.0 | 0.51 |
| EspI_KO | 0.271 | 1.934 |
| PE35_KO | -0.589 | 0.796 |
| PPE68_KO | -0.442 | 1.523 |
| glycerol2 | -0.346 | -1.516 |
| lignocerate | -0.058 | -1.445 |
| oleate | -0.289 | -0.045 |
| phosphatidylcholine | -0.045 | -0.403 |
| acetate | -0.71 | -1.837 |
| glucAc | -0.427 | -2.853 |
| Rv0950ko | -0.069 | 1.263 |
| Rv1096ko | 0.271 | 0.989 |
| Rv3684ko | 0.102 | 0.095 |
| delta_otsA_trehalose | 1.23 | 0.483 |