Top 10 genes with highest correlation to Rv3414c/sigD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2171/lppM | (cc=0.5127) | info on Rv2171/lppM |
| Rv1184c/- | (cc=0.5091) | info on Rv1184c/- |
| Rv2203/- | (cc=0.4974) | info on Rv2203/- |
| Rv1860/apa | (cc=0.4957) | info on Rv1860/apa |
| Rv3770c/- | (cc=0.4922) | info on Rv3770c/- |
| Rv2125/- | (cc=0.4734) | info on Rv2125/- |
| Rv2013/- | (cc=0.4669) | info on Rv2013/- |
| Rv2170/- | (cc=0.4619) | info on Rv2170/- |
| Rv1006/- | (cc=0.4442) | info on Rv1006/- |
| Rv0616A/vapB29 | (cc=0.4384) | info on Rv0616A/vapB29 |
Correlation of Rv3414c/sigD with Rv3770c/-
Normalized LFCs for Rv3414c/sigD:
(description and provenance of datasets)
| Rv3414c/sigD | Rv3770c/- | |
| Fe_supp_jason_reseq | -0.35 | 0.489 |
| low_pH_jason_reseq | -0.557 | -0.835 |
| NO_jason_reseq | -1.72 | -0.866 |
| B6_jason_reseq | 0.28 | 0.151 |
| MHCII_jason_reseq | 1.731 | 1.268 |
| Isoniazid02 | 0.074 | -0.025 |
| Rifampicin4 | -3.985 | -0.514 |
| Ethambutol3 | -0.049 | -0.744 |
| Meropenem3 | -0.847 | -0.782 |
| Vancomycin16 | -2.552 | 0.027 |
| Rv2680_day32 | 0.773 | 0.147 |
| H37Rv_KO_MarP | -0.216 | 0.063 |
| hypoxia_3wks | -0.646 | 0.247 |
| hypoxia_6wks | -1.276 | 0.063 |
| glycerol | 0.301 | 0.236 |
| cholesterol | 0.767 | 0.088 |
| AJ | 0.141 | -0.176 |
| Bibs02 | 0.531 | 0.609 |
| Bibs02c | -0.718 | 0.67 |
| BL6 | -2.194 | -1.019 |
| BL6a | -0.55 | 0.557 |
| BXD01 | -1.442 | -0.429 |
| BXD010 | -2.766 | -0.024 |
| BXD011 | -1.155 | -0.017 |
| BXD03 | -1.249 | -0.247 |
| BXD04 | -0.524 | -0.563 |
| BXD05 | -0.884 | -0.289 |
| BXD06 | -1.35 | -0.075 |
| BXD07 | -1.35 | -0.004 |
| BXD08 | -0.469 | -0.131 |
| BXD09 | -0.905 | -0.305 |
| CAST | -1.124 | -0.364 |
| CCcont | -0.618 | -0.503 |
| DS01 | 0.159 | 0.501 |
| DS02 | 0.09 | 0.386 |
| DS04 | -0.991 | 0.148 |
| DS0c | -0.544 | 0.715 |
| GP01 | -0.981 | -0.388 |
| GP02 | -1.491 | -1.376 |
| GP0c | -1.466 | -0.356 |
| NOD | -0.623 | -0.078 |
| NZO | -0.331 | -0.038 |
| PWK | -0.655 | -0.377 |
| H37Rv_KO_CtpC | -0.141 | -0.044 |
| H37Rv_KO_CtpD | -1.965 | -0.196 |
| H37Rv_KO_Rv1272 | -1.256 | -0.416 |
| H37Rv_KO_SugABC | 0.751 | -0.367 |
| H37Rv_KO_MbtN | 0.261 | -0.084 |
| Trans05 | -0.638 | 0.441 |
| macrophage_unactivated | -0.587 | -0.42 |
| IL1 | 0.0 | -0.394 |
| Rapamycin | 0.506 | 0.101 |
| Tcell | -0.212 | 0.0 |
| GMCSF | -1.053 | -0.269 |
| IFNab | 0.278 | 0.0 |
| IFNg | -0.086 | 0.233 |
| IFNg_GMCSF1 | 0.0 | 0.104 |
| Rv1432_day32 | -0.763 | 1.038 |
| Rv1565c_day32 | -1.106 | -0.321 |
| secA2_input | 0.451 | 0.756 |
| delta_Rv3594 | 1.519 | -0.035 |
| delta_Rv3717 | 0.193 | 0.049 |
| delta_Rv3811 | 0.248 | 0.705 |
| delta_Rv0954 | 0.806 | 0.715 |
| PonA1 | 0.323 | 0.716 |
| EccD1_KO | -1.128 | 0.263 |
| EspI_KO | -0.137 | 0.502 |
| PE35_KO | -1.175 | 0.038 |
| PPE68_KO | -0.39 | -0.013 |
| glycerol2 | -0.022 | 0.562 |
| lignocerate | -0.673 | 0.503 |
| oleate | -0.62 | 0.24 |
| phosphatidylcholine | -0.521 | 0.363 |
| acetate | -0.801 | -0.555 |
| glucAc | -0.32 | -0.27 |
| Rv0950ko | -1.077 | 0.314 |
| Rv1096ko | 0.187 | 0.133 |
| Rv3684ko | -1.556 | 0.409 |
| delta_otsA_trehalose | 2.888 | 1.271 |