Top 10 genes with highest correlation to Rv3414c/sigD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2171/lppM | (cc=0.5127) | info on Rv2171/lppM |
| Rv1184c/- | (cc=0.5091) | info on Rv1184c/- |
| Rv2203/- | (cc=0.4974) | info on Rv2203/- |
| Rv1860/apa | (cc=0.4957) | info on Rv1860/apa |
| Rv3770c/- | (cc=0.4922) | info on Rv3770c/- |
| Rv2125/- | (cc=0.4734) | info on Rv2125/- |
| Rv2013/- | (cc=0.4669) | info on Rv2013/- |
| Rv2170/- | (cc=0.4619) | info on Rv2170/- |
| Rv1006/- | (cc=0.4442) | info on Rv1006/- |
| Rv0616A/vapB29 | (cc=0.4384) | info on Rv0616A/vapB29 |
Correlation of Rv3414c/sigD with Rv1184c/-
Normalized LFCs for Rv3414c/sigD:
(description and provenance of datasets)
| Rv3414c/sigD | Rv1184c/- | |
| Fe_supp_jason_reseq | -0.35 | 1.708 |
| low_pH_jason_reseq | -0.557 | -0.694 |
| NO_jason_reseq | -1.72 | -0.399 |
| B6_jason_reseq | 0.28 | 1.187 |
| MHCII_jason_reseq | 1.731 | 1.676 |
| Isoniazid02 | 0.074 | -0.202 |
| Rifampicin4 | -3.985 | -1.335 |
| Ethambutol3 | -0.049 | -0.734 |
| Meropenem3 | -0.847 | -0.83 |
| Vancomycin16 | -2.552 | -0.316 |
| Rv2680_day32 | 0.773 | 0.241 |
| H37Rv_KO_MarP | -0.216 | 0.185 |
| hypoxia_3wks | -0.646 | 0.223 |
| hypoxia_6wks | -1.276 | -0.265 |
| glycerol | 0.301 | -0.443 |
| cholesterol | 0.767 | -0.372 |
| AJ | 0.141 | -0.953 |
| Bibs02 | 0.531 | -0.114 |
| Bibs02c | -0.718 | -0.62 |
| BL6 | -2.194 | -1.109 |
| BL6a | -0.55 | -1.478 |
| BXD01 | -1.442 | -2.236 |
| BXD010 | -2.766 | -1.344 |
| BXD011 | -1.155 | -1.279 |
| BXD03 | -1.249 | -1.588 |
| BXD04 | -0.524 | -1.554 |
| BXD05 | -0.884 | -0.796 |
| BXD06 | -1.35 | -1.975 |
| BXD07 | -1.35 | -1.52 |
| BXD08 | -0.469 | -1.833 |
| BXD09 | -0.905 | -1.349 |
| CAST | -1.124 | -1.8 |
| CCcont | -0.618 | -0.784 |
| DS01 | 0.159 | -0.443 |
| DS02 | 0.09 | -0.057 |
| DS04 | -0.991 | -0.898 |
| DS0c | -0.544 | 0.162 |
| GP01 | -0.981 | -1.674 |
| GP02 | -1.491 | -1.879 |
| GP0c | -1.466 | -2.176 |
| NOD | -0.623 | -0.771 |
| NZO | -0.331 | -1.12 |
| PWK | -0.655 | -1.189 |
| H37Rv_KO_CtpC | -0.141 | -1.612 |
| H37Rv_KO_CtpD | -1.965 | -1.315 |
| H37Rv_KO_Rv1272 | -1.256 | -1.713 |
| H37Rv_KO_SugABC | 0.751 | -1.303 |
| H37Rv_KO_MbtN | 0.261 | -0.742 |
| Trans05 | -0.638 | -0.537 |
| macrophage_unactivated | -0.587 | -1.654 |
| IL1 | 0.0 | 1.584 |
| Rapamycin | 0.506 | 0.822 |
| Tcell | -0.212 | -1.978 |
| GMCSF | -1.053 | -0.293 |
| IFNab | 0.278 | 0.698 |
| IFNg | -0.086 | -0.297 |
| IFNg_GMCSF1 | 0.0 | 0.097 |
| Rv1432_day32 | -0.763 | -1.902 |
| Rv1565c_day32 | -1.106 | 0.212 |
| secA2_input | 0.451 | -0.603 |
| delta_Rv3594 | 1.519 | 0.724 |
| delta_Rv3717 | 0.193 | 0.131 |
| delta_Rv3811 | 0.248 | -0.462 |
| delta_Rv0954 | 0.806 | 0.487 |
| PonA1 | 0.323 | 0.634 |
| EccD1_KO | -1.128 | -2.424 |
| EspI_KO | -0.137 | -0.516 |
| PE35_KO | -1.175 | -1.502 |
| PPE68_KO | -0.39 | -1.245 |
| glycerol2 | -0.022 | 0.247 |
| lignocerate | -0.673 | 0.485 |
| oleate | -0.62 | -1.168 |
| phosphatidylcholine | -0.521 | -0.511 |
| acetate | -0.801 | 0.389 |
| glucAc | -0.32 | 0.035 |
| Rv0950ko | -1.077 | -0.196 |
| Rv1096ko | 0.187 | 0.401 |
| Rv3684ko | -1.556 | -0.573 |
| delta_otsA_trehalose | 2.888 | 0.206 |