Top 10 genes with highest correlation to Rv3414c/sigD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2171/lppM | (cc=0.5127) | info on Rv2171/lppM |
| Rv1184c/- | (cc=0.5091) | info on Rv1184c/- |
| Rv2203/- | (cc=0.4974) | info on Rv2203/- |
| Rv1860/apa | (cc=0.4957) | info on Rv1860/apa |
| Rv3770c/- | (cc=0.4922) | info on Rv3770c/- |
| Rv2125/- | (cc=0.4734) | info on Rv2125/- |
| Rv2013/- | (cc=0.4669) | info on Rv2013/- |
| Rv2170/- | (cc=0.4619) | info on Rv2170/- |
| Rv1006/- | (cc=0.4442) | info on Rv1006/- |
| Rv0616A/vapB29 | (cc=0.4384) | info on Rv0616A/vapB29 |
Correlation of Rv3414c/sigD with Rv2170/-
Normalized LFCs for Rv3414c/sigD:
(description and provenance of datasets)
| Rv3414c/sigD | Rv2170/- | |
| Fe_supp_jason_reseq | -0.35 | 2.939 |
| low_pH_jason_reseq | -0.557 | -0.231 |
| NO_jason_reseq | -1.72 | -1.205 |
| B6_jason_reseq | 0.28 | -0.842 |
| MHCII_jason_reseq | 1.731 | 0.0 |
| Isoniazid02 | 0.074 | -0.79 |
| Rifampicin4 | -3.985 | -5.992 |
| Ethambutol3 | -0.049 | -0.494 |
| Meropenem3 | -0.847 | -0.889 |
| Vancomycin16 | -2.552 | -1.125 |
| Rv2680_day32 | 0.773 | -1.871 |
| H37Rv_KO_MarP | -0.216 | -2.007 |
| hypoxia_3wks | -0.646 | -0.77 |
| hypoxia_6wks | -1.276 | -2.088 |
| glycerol | 0.301 | 1.056 |
| cholesterol | 0.767 | 2.127 |
| AJ | 0.141 | -1.14 |
| Bibs02 | 0.531 | -1.325 |
| Bibs02c | -0.718 | 0.774 |
| BL6 | -2.194 | -1.687 |
| BL6a | -0.55 | -1.058 |
| BXD01 | -1.442 | -1.529 |
| BXD010 | -2.766 | -1.728 |
| BXD011 | -1.155 | -1.603 |
| BXD03 | -1.249 | -1.701 |
| BXD04 | -0.524 | -1.792 |
| BXD05 | -0.884 | -1.477 |
| BXD06 | -1.35 | -1.68 |
| BXD07 | -1.35 | -1.419 |
| BXD08 | -0.469 | -1.927 |
| BXD09 | -0.905 | -1.018 |
| CAST | -1.124 | -1.036 |
| CCcont | -0.618 | -0.164 |
| DS01 | 0.159 | -1.16 |
| DS02 | 0.09 | -1.161 |
| DS04 | -0.991 | -1.307 |
| DS0c | -0.544 | 0.68 |
| GP01 | -0.981 | -0.368 |
| GP02 | -1.491 | 0.462 |
| GP0c | -1.466 | -0.752 |
| NOD | -0.623 | 0.428 |
| NZO | -0.331 | -2.189 |
| PWK | -0.655 | -0.732 |
| H37Rv_KO_CtpC | -0.141 | 0.631 |
| H37Rv_KO_CtpD | -1.965 | -0.255 |
| H37Rv_KO_Rv1272 | -1.256 | -1.261 |
| H37Rv_KO_SugABC | 0.751 | -1.336 |
| H37Rv_KO_MbtN | 0.261 | -0.644 |
| Trans05 | -0.638 | 0.034 |
| macrophage_unactivated | -0.587 | 0.0 |
| IL1 | 0.0 | 0.0 |
| Rapamycin | 0.506 | 0.936 |
| Tcell | -0.212 | 0.0 |
| GMCSF | -1.053 | 0.618 |
| IFNab | 0.278 | 0.922 |
| IFNg | -0.086 | 0.428 |
| IFNg_GMCSF1 | 0.0 | 0.958 |
| Rv1432_day32 | -0.763 | -1.304 |
| Rv1565c_day32 | -1.106 | -0.502 |
| secA2_input | 0.451 | 0.479 |
| delta_Rv3594 | 1.519 | -0.746 |
| delta_Rv3717 | 0.193 | -0.773 |
| delta_Rv3811 | 0.248 | 0.541 |
| delta_Rv0954 | 0.806 | 1.149 |
| PonA1 | 0.323 | 0.328 |
| EccD1_KO | -1.128 | -1.713 |
| EspI_KO | -0.137 | -0.676 |
| PE35_KO | -1.175 | -0.805 |
| PPE68_KO | -0.39 | -0.637 |
| glycerol2 | -0.022 | -1.159 |
| lignocerate | -0.673 | -0.353 |
| oleate | -0.62 | -1.381 |
| phosphatidylcholine | -0.521 | -0.913 |
| acetate | -0.801 | -0.825 |
| glucAc | -0.32 | -1.236 |
| Rv0950ko | -1.077 | -1.634 |
| Rv1096ko | 0.187 | -1.176 |
| Rv3684ko | -1.556 | 0.671 |
| delta_otsA_trehalose | 2.888 | 0.243 |