Top 10 genes with highest correlation to Rv3414c/sigD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2171/lppM | (cc=0.5127) | info on Rv2171/lppM |
| Rv1184c/- | (cc=0.5091) | info on Rv1184c/- |
| Rv2203/- | (cc=0.4974) | info on Rv2203/- |
| Rv1860/apa | (cc=0.4957) | info on Rv1860/apa |
| Rv3770c/- | (cc=0.4922) | info on Rv3770c/- |
| Rv2125/- | (cc=0.4734) | info on Rv2125/- |
| Rv2013/- | (cc=0.4669) | info on Rv2013/- |
| Rv2170/- | (cc=0.4619) | info on Rv2170/- |
| Rv1006/- | (cc=0.4442) | info on Rv1006/- |
| Rv0616A/vapB29 | (cc=0.4384) | info on Rv0616A/vapB29 |
Correlation of Rv3414c/sigD with Rv0616A/vapB29
Normalized LFCs for Rv3414c/sigD:
(description and provenance of datasets)
| Rv3414c/sigD | Rv0616A/vapB29 | |
| Fe_supp_jason_reseq | -0.35 | 0.635 |
| low_pH_jason_reseq | -0.557 | -1.066 |
| NO_jason_reseq | -1.72 | -1.089 |
| B6_jason_reseq | 0.28 | 0.057 |
| MHCII_jason_reseq | 1.731 | 1.027 |
| Isoniazid02 | 0.074 | -0.53 |
| Rifampicin4 | -3.985 | -2.708 |
| Ethambutol3 | -0.049 | -1.721 |
| Meropenem3 | -0.847 | -1.538 |
| Vancomycin16 | -2.552 | -1.287 |
| Rv2680_day32 | 0.773 | 0.473 |
| H37Rv_KO_MarP | -0.216 | 0.299 |
| hypoxia_3wks | -0.646 | -2.165 |
| hypoxia_6wks | -1.276 | -1.036 |
| glycerol | 0.301 | -0.796 |
| cholesterol | 0.767 | -0.783 |
| AJ | 0.141 | -1.309 |
| Bibs02 | 0.531 | -0.564 |
| Bibs02c | -0.718 | -0.059 |
| BL6 | -2.194 | 0.71 |
| BL6a | -0.55 | -1.231 |
| BXD01 | -1.442 | -3.352 |
| BXD010 | -2.766 | -2.113 |
| BXD011 | -1.155 | -1.331 |
| BXD03 | -1.249 | -1.267 |
| BXD04 | -0.524 | -2.682 |
| BXD05 | -0.884 | -0.441 |
| BXD06 | -1.35 | -2.329 |
| BXD07 | -1.35 | -2.639 |
| BXD08 | -0.469 | -1.06 |
| BXD09 | -0.905 | -2.72 |
| CAST | -1.124 | 1.89 |
| CCcont | -0.618 | -1.299 |
| DS01 | 0.159 | -0.881 |
| DS02 | 0.09 | 0.375 |
| DS04 | -0.991 | -2.35 |
| DS0c | -0.544 | -1.958 |
| GP01 | -0.981 | -2.932 |
| GP02 | -1.491 | -0.706 |
| GP0c | -1.466 | -1.83 |
| NOD | -0.623 | 0.182 |
| NZO | -0.331 | -0.666 |
| PWK | -0.655 | -0.372 |
| H37Rv_KO_CtpC | -0.141 | -1.466 |
| H37Rv_KO_CtpD | -1.965 | -3.192 |
| H37Rv_KO_Rv1272 | -1.256 | -3.483 |
| H37Rv_KO_SugABC | 0.751 | -0.939 |
| H37Rv_KO_MbtN | 0.261 | -1.432 |
| Trans05 | -0.638 | -0.916 |
| macrophage_unactivated | -0.587 | -2.007 |
| IL1 | 0.0 | -1.323 |
| Rapamycin | 0.506 | -1.765 |
| Tcell | -0.212 | -1.32 |
| GMCSF | -1.053 | 0.306 |
| IFNab | 0.278 | -0.837 |
| IFNg | -0.086 | 0.134 |
| IFNg_GMCSF1 | 0.0 | -1.313 |
| Rv1432_day32 | -0.763 | -0.475 |
| Rv1565c_day32 | -1.106 | 0.265 |
| secA2_input | 0.451 | -1.853 |
| delta_Rv3594 | 1.519 | 0.702 |
| delta_Rv3717 | 0.193 | 0.405 |
| delta_Rv3811 | 0.248 | 1.939 |
| delta_Rv0954 | 0.806 | 1.799 |
| PonA1 | 0.323 | 2.649 |
| EccD1_KO | -1.128 | 0.194 |
| EspI_KO | -0.137 | -2.073 |
| PE35_KO | -1.175 | -2.121 |
| PPE68_KO | -0.39 | -1.078 |
| glycerol2 | -0.022 | 0.0 |
| lignocerate | -0.673 | 1.61 |
| oleate | -0.62 | 0.196 |
| phosphatidylcholine | -0.521 | 0.531 |
| acetate | -0.801 | 2.382 |
| glucAc | -0.32 | 2.569 |
| Rv0950ko | -1.077 | -2.053 |
| Rv1096ko | 0.187 | -0.648 |
| Rv3684ko | -1.556 | -1.87 |
| delta_otsA_trehalose | 2.888 | 2.222 |