Top 10 genes with highest correlation to Rv3386/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3487c/lipF | (cc=0.4515) | info on Rv3487c/lipF |
| Rv3875/esxA | (cc=0.4486) | info on Rv3875/esxA |
| Rv3516/echA19 | (cc=0.4448) | info on Rv3516/echA19 |
| Rv0891c/- | (cc=0.4383) | info on Rv0891c/- |
| Rv1509/- | (cc=0.4365) | info on Rv1509/- |
| Rv1469/ctpD | (cc=0.4363) | info on Rv1469/ctpD |
| Rv0604/lpqO | (cc=0.4227) | info on Rv0604/lpqO |
| Rv2809/- | (cc=0.4154) | info on Rv2809/- |
| Rv1757c/- | (cc=0.4153) | info on Rv1757c/- |
| Rv2481c/- | (cc=0.409) | info on Rv2481c/- |
Correlation of Rv3386/- with Rv0604/lpqO
Normalized LFCs for Rv3386/-:
(description and provenance of datasets)
| Rv3386/- | Rv0604/lpqO | |
| Fe_supp_jason_reseq | 1.113 | 1.159 |
| low_pH_jason_reseq | -1.218 | -1.474 |
| NO_jason_reseq | -0.711 | -2.195 |
| B6_jason_reseq | -0.029 | 0.798 |
| MHCII_jason_reseq | -0.176 | 1.287 |
| Isoniazid02 | -0.487 | 0.038 |
| Rifampicin4 | 0.91 | 0.347 |
| Ethambutol3 | 0.12 | -0.17 |
| Meropenem3 | -0.243 | 0.048 |
| Vancomycin16 | 0.058 | 0.0 |
| Rv2680_day32 | -1.645 | -0.525 |
| H37Rv_KO_MarP | 0.066 | 0.116 |
| hypoxia_3wks | -0.219 | 0.53 |
| hypoxia_6wks | -0.038 | -0.507 |
| glycerol | -0.781 | 1.27 |
| cholesterol | -0.397 | 0.077 |
| AJ | -0.2 | 0.729 |
| Bibs02 | -0.013 | 1.249 |
| Bibs02c | -0.767 | 0.896 |
| BL6 | -0.225 | 0.144 |
| BL6a | -0.489 | 0.027 |
| BXD01 | 0.245 | 0.39 |
| BXD010 | -0.159 | -0.118 |
| BXD011 | -0.383 | -0.94 |
| BXD03 | 0.444 | -0.115 |
| BXD04 | -0.284 | -1.037 |
| BXD05 | 0.246 | 0.089 |
| BXD06 | -0.307 | -0.78 |
| BXD07 | 0.353 | -0.46 |
| BXD08 | 0.618 | 0.509 |
| BXD09 | -0.01 | -0.416 |
| CAST | 0.889 | -0.112 |
| CCcont | 0.07 | 0.098 |
| DS01 | -0.96 | 0.731 |
| DS02 | -1.092 | 0.684 |
| DS04 | -0.583 | 0.839 |
| DS0c | -0.594 | 0.404 |
| GP01 | 0.278 | 0.0 |
| GP02 | 1.177 | -0.262 |
| GP0c | 0.078 | -0.101 |
| NOD | 0.714 | -0.921 |
| NZO | 0.081 | 0.118 |
| PWK | 0.347 | -0.124 |
| H37Rv_KO_CtpC | -0.401 | -1.291 |
| H37Rv_KO_CtpD | -0.541 | -0.532 |
| H37Rv_KO_Rv1272 | -0.039 | -1.06 |
| H37Rv_KO_SugABC | -1.613 | -1.802 |
| H37Rv_KO_MbtN | -0.495 | -0.819 |
| Trans05 | 0.185 | 0.462 |
| macrophage_unactivated | -0.028 | 1.18 |
| IL1 | 0.08 | 0.027 |
| Rapamycin | -0.506 | -0.792 |
| Tcell | -0.886 | -0.274 |
| GMCSF | -1.024 | 0.14 |
| IFNab | -0.469 | -0.342 |
| IFNg | -0.756 | -1.085 |
| IFNg_GMCSF1 | -0.361 | 2.124 |
| Rv1432_day32 | 1.112 | 1.395 |
| Rv1565c_day32 | 1.042 | 1.058 |
| secA2_input | -0.604 | -0.221 |
| delta_Rv3594 | -1.241 | -0.857 |
| delta_Rv3717 | -0.745 | -1.05 |
| delta_Rv3811 | -0.973 | -1.689 |
| delta_Rv0954 | -1.31 | -0.724 |
| PonA1 | -1.301 | -2.328 |
| EccD1_KO | 0.076 | 0.506 |
| EspI_KO | -0.328 | -0.24 |
| PE35_KO | -0.023 | 0.175 |
| PPE68_KO | -0.259 | 0.637 |
| glycerol2 | 0.283 | 0.726 |
| lignocerate | 0.678 | 1.142 |
| oleate | -0.136 | 1.353 |
| phosphatidylcholine | -0.104 | 1.452 |
| acetate | 0.133 | 0.843 |
| glucAc | 0.281 | 0.631 |
| Rv0950ko | 0.329 | 0.799 |
| Rv1096ko | -0.953 | 0.124 |
| Rv3684ko | -0.19 | 0.665 |
| delta_otsA_trehalose | -0.016 | 1.318 |