Top 10 genes with highest correlation to Rv3384c/vapC46:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3860/- | (cc=0.5503) | info on Rv3860/- |
| Rv3022A/PE29 | (cc=0.4382) | info on Rv3022A/PE29 |
| Rv3798/- | (cc=0.4171) | info on Rv3798/- |
| Rv0860/fadB | (cc=0.4168) | info on Rv0860/fadB |
| Rv1225c/- | (cc=0.4107) | info on Rv1225c/- |
| Rv2812/- | (cc=0.4059) | info on Rv2812/- |
| Rv1961/- | (cc=0.4032) | info on Rv1961/- |
| Rv1878/glnA3 | (cc=0.3965) | info on Rv1878/glnA3 |
| Rv1951c/- | (cc=0.3955) | info on Rv1951c/- |
| Rv2154c/ftsW | (cc=0.3867) | info on Rv2154c/ftsW |
Correlation of Rv3384c/vapC46 with Rv2812/-
Normalized LFCs for Rv3384c/vapC46:
(description and provenance of datasets)
| Rv3384c/vapC46 | Rv2812/- | |
| Fe_supp_jason_reseq | -1.924 | -1.509 |
| low_pH_jason_reseq | -0.848 | -0.038 |
| NO_jason_reseq | -0.606 | -0.507 |
| B6_jason_reseq | -1.495 | -1.213 |
| MHCII_jason_reseq | -2.384 | -0.529 |
| Isoniazid02 | 0.313 | 0.113 |
| Rifampicin4 | 0.899 | 1.124 |
| Ethambutol3 | 0.624 | 0.311 |
| Meropenem3 | 0.648 | 0.138 |
| Vancomycin16 | 0.881 | 1.101 |
| Rv2680_day32 | -2.671 | -0.338 |
| H37Rv_KO_MarP | 0.667 | 0.188 |
| hypoxia_3wks | -0.65 | 0.0 |
| hypoxia_6wks | -2.334 | 0.0 |
| glycerol | -0.304 | 0.045 |
| cholesterol | 0.191 | -0.457 |
| AJ | 1.887 | 0.913 |
| Bibs02 | 1.09 | -0.694 |
| Bibs02c | -1.446 | -0.476 |
| BL6 | -1.546 | -1.555 |
| BL6a | -0.822 | 0.214 |
| BXD01 | -1.54 | -0.944 |
| BXD010 | -0.817 | -0.256 |
| BXD011 | -0.937 | 0.262 |
| BXD03 | 0.418 | 0.03 |
| BXD04 | -0.322 | 0.254 |
| BXD05 | 0.529 | 0.089 |
| BXD06 | -0.246 | -0.031 |
| BXD07 | 0.083 | 0.0 |
| BXD08 | -0.142 | -0.642 |
| BXD09 | 0.206 | -0.033 |
| CAST | -0.551 | -0.591 |
| CCcont | -0.087 | -0.89 |
| DS01 | 0.448 | -0.346 |
| DS02 | -0.4 | 0.0 |
| DS04 | -2.363 | -1.006 |
| DS0c | -0.726 | -0.434 |
| GP01 | 0.377 | 0.257 |
| GP02 | 0.404 | -0.237 |
| GP0c | 0.0 | 1.209 |
| NOD | -1.704 | 0.584 |
| NZO | 1.098 | 0.588 |
| PWK | 0.686 | -0.338 |
| H37Rv_KO_CtpC | 1.131 | 0.613 |
| H37Rv_KO_CtpD | -0.276 | 0.373 |
| H37Rv_KO_Rv1272 | 0.5 | -0.134 |
| H37Rv_KO_SugABC | 0.808 | -0.119 |
| H37Rv_KO_MbtN | 1.899 | -1.281 |
| Trans05 | -0.932 | -1.208 |
| macrophage_unactivated | 0.401 | -0.208 |
| IL1 | -0.656 | 0.365 |
| Rapamycin | 0.083 | -0.632 |
| Tcell | -0.85 | -0.326 |
| GMCSF | 0.634 | 0.552 |
| IFNab | 0.23 | 0.372 |
| IFNg | 0.802 | 0.086 |
| IFNg_GMCSF1 | -0.053 | 0.101 |
| Rv1432_day32 | -0.065 | 0.113 |
| Rv1565c_day32 | -0.599 | -0.611 |
| secA2_input | -0.728 | 0.319 |
| delta_Rv3594 | 0.665 | 0.203 |
| delta_Rv3717 | 0.437 | -0.121 |
| delta_Rv3811 | 1.132 | 0.321 |
| delta_Rv0954 | -0.222 | -0.912 |
| PonA1 | -1.07 | -0.358 |
| EccD1_KO | 0.77 | 0.543 |
| EspI_KO | 0.896 | 0.359 |
| PE35_KO | 0.335 | 0.0 |
| PPE68_KO | 0.086 | 0.403 |
| glycerol2 | -1.77 | -0.849 |
| lignocerate | 0.223 | -0.33 |
| oleate | -3.424 | -0.859 |
| phosphatidylcholine | -0.95 | -0.601 |
| acetate | 0.261 | -0.07 |
| glucAc | 0.216 | -0.387 |
| Rv0950ko | -0.929 | 0.525 |
| Rv1096ko | -1.285 | 0.905 |
| Rv3684ko | -1.205 | 0.462 |
| delta_otsA_trehalose | -1.541 | -0.331 |