Top 10 genes with highest correlation to Rv3349c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3103c/- | (cc=0.5003) | info on Rv3103c/- |
| Rv3803c/fbpD | (cc=0.477) | info on Rv3803c/fbpD |
| Rv0526/- | (cc=0.4531) | info on Rv0526/- |
| Rv2718c/nrdR | (cc=0.4478) | info on Rv2718c/nrdR |
| Rv0320/- | (cc=0.4351) | info on Rv0320/- |
| Rv3249c/- | (cc=0.4346) | info on Rv3249c/- |
| Rv0392c/ndhA | (cc=0.4198) | info on Rv0392c/ndhA |
| Rv1363c/- | (cc=0.4139) | info on Rv1363c/- |
| Rv0078/- | (cc=0.4041) | info on Rv0078/- |
| Rv1839c/vapB13 | (cc=0.3996) | info on Rv1839c/vapB13 |
Correlation of Rv3349c/- with Rv3249c/-
Normalized LFCs for Rv3349c/-:
(description and provenance of datasets)
| Rv3349c/- | Rv3249c/- | |
| Fe_supp_jason_reseq | 0.333 | 0.734 |
| low_pH_jason_reseq | -0.294 | 1.65 |
| NO_jason_reseq | -1.659 | -0.572 |
| B6_jason_reseq | 0.516 | 0.093 |
| MHCII_jason_reseq | 0.083 | 0.108 |
| Isoniazid02 | 0.06 | -1.28 |
| Rifampicin4 | 0.412 | -0.406 |
| Ethambutol3 | 0.085 | 0.646 |
| Meropenem3 | 0.875 | 3.512 |
| Vancomycin16 | -0.162 | -0.294 |
| Rv2680_day32 | 0.819 | -0.459 |
| H37Rv_KO_MarP | 0.093 | 0.22 |
| hypoxia_3wks | 0.762 | -0.167 |
| hypoxia_6wks | 0.555 | -0.464 |
| glycerol | -0.092 | 0.0 |
| cholesterol | 2.255 | -0.717 |
| AJ | 0.709 | -0.341 |
| Bibs02 | 1.681 | -0.342 |
| Bibs02c | 0.299 | -0.391 |
| BL6 | -1.566 | 0.565 |
| BL6a | 0.375 | -0.33 |
| BXD01 | -0.536 | -0.271 |
| BXD010 | -1.117 | 0.0 |
| BXD011 | -0.375 | 0.125 |
| BXD03 | -0.223 | -0.461 |
| BXD04 | -0.183 | 1.434 |
| BXD05 | 0.046 | 0.067 |
| BXD06 | -0.102 | -0.697 |
| BXD07 | -0.611 | -0.506 |
| BXD08 | -1.541 | -0.518 |
| BXD09 | -0.432 | -1.042 |
| CAST | 0.687 | 0.262 |
| CCcont | -0.571 | 1.003 |
| DS01 | 0.135 | -0.347 |
| DS02 | -0.334 | 0.781 |
| DS04 | -1.008 | -1.578 |
| DS0c | 0.374 | -0.193 |
| GP01 | -1.285 | -1.866 |
| GP02 | -1.7 | -1.414 |
| GP0c | -0.751 | -0.754 |
| NOD | -0.161 | 0.578 |
| NZO | -1.546 | -0.293 |
| PWK | -0.01 | 0.843 |
| H37Rv_KO_CtpC | -0.125 | -0.304 |
| H37Rv_KO_CtpD | -0.077 | 0.124 |
| H37Rv_KO_Rv1272 | 1.673 | 0.772 |
| H37Rv_KO_SugABC | -1.676 | -0.966 |
| H37Rv_KO_MbtN | 1.389 | 0.101 |
| Trans05 | -0.428 | -0.881 |
| macrophage_unactivated | -0.17 | 0.963 |
| IL1 | 1.489 | 1.872 |
| Rapamycin | 1.623 | 0.252 |
| Tcell | -0.375 | 0.179 |
| GMCSF | 0.264 | 1.259 |
| IFNab | 0.837 | 1.318 |
| IFNg | 0.826 | 0.219 |
| IFNg_GMCSF1 | 0.823 | 1.169 |
| Rv1432_day32 | 0.465 | -0.859 |
| Rv1565c_day32 | -0.592 | 0.385 |
| secA2_input | 0.665 | -1.285 |
| delta_Rv3594 | -0.999 | 1.0 |
| delta_Rv3717 | 0.18 | 0.169 |
| delta_Rv3811 | 0.326 | 1.005 |
| delta_Rv0954 | 0.218 | -0.295 |
| PonA1 | -0.16 | -0.062 |
| EccD1_KO | -0.74 | -0.046 |
| EspI_KO | -0.411 | -0.077 |
| PE35_KO | -0.105 | 0.265 |
| PPE68_KO | 0.176 | -0.045 |
| glycerol2 | -2.385 | -1.935 |
| lignocerate | -2.03 | -1.853 |
| oleate | -1.511 | -1.276 |
| phosphatidylcholine | -1.724 | -1.798 |
| acetate | -1.458 | -0.929 |
| glucAc | -0.98 | -1.295 |
| Rv0950ko | 0.078 | -0.356 |
| Rv1096ko | -0.86 | -0.314 |
| Rv3684ko | -0.386 | -1.834 |
| delta_otsA_trehalose | -0.431 | 0.92 |