TnSeqCorr

Top 10 genes with highest correlation to Rv3230c/-:

update plotcorrelationlink to info on gene
Rv3229c/desA3 (cc=0.6832) info on Rv3229c/desA3
Rv1085c/- (cc=0.5478) info on Rv1085c/-
Rv2081c/- (cc=0.4949) info on Rv2081c/-
Rv1074c/fadA3 (cc=0.4893) info on Rv1074c/fadA3
Rv0692/- (cc=0.4855) info on Rv0692/-
Rv0390/- (cc=0.4682) info on Rv0390/-
Rv3510c/- (cc=0.4643) info on Rv3510c/-
Rv1523/- (cc=0.458) info on Rv1523/-
Rv2360c/- (cc=0.4568) info on Rv2360c/-
Rv1590/- (cc=0.4478) info on Rv1590/-

Correlation of Rv3230c/- with Rv2360c/-

Normalized LFCs for Rv3230c/-:
(description and provenance of datasets)
Rv3230c/-Rv2360c/-
Fe_supp_jason_reseq

1.118

0.167

low_pH_jason_reseq

-2.28

1.777

NO_jason_reseq

-0.845

-0.704

B6_jason_reseq

0.018

1.686

MHCII_jason_reseq

0.613

0.171

Isoniazid02

0.042

1.302

Rifampicin4

0.658

-0.087

Ethambutol3

0.295

0.945

Meropenem3

-0.351

0.331

Vancomycin16

0.838

-0.191

Rv2680_day32

-0.428

-0.214

H37Rv_KO_MarP

-1.544

0.202

hypoxia_3wks

1.22

0.347

hypoxia_6wks

-0.639

0.637

glycerol

-4.991

-2.345

cholesterol

-2.671

-1.121

AJ

-0.822

-0.424

Bibs02

-2.383

-2.105

Bibs02c

-2.902

-2.216

BL6

-0.393

-0.385

BL6a

-1.967

-0.544

BXD01

-1.526

-0.004

BXD010

-0.935

-0.69

BXD011

-0.42

0.079

BXD03

-1.709

-0.434

BXD04

-1.516

0.239

BXD05

-0.7

0.043

BXD06

-1.326

-0.477

BXD07

-1.482

-0.14

BXD08

-1.17

-0.12

BXD09

-1.416

-0.103

CAST

-0.911

-0.113

CCcont

-0.357

-0.757

DS01

-2.046

-1.114

DS02

-1.465

-0.898

DS04

-0.238

-0.746

DS0c

-1.851

-0.775

GP01

-1.483

-0.576

GP02

-1.429

1.588

GP0c

-1.832

-0.39

NOD

0.0

0.789

NZO

-0.433

-1.477

PWK

-0.034

-0.604

H37Rv_KO_CtpC

-2.325

-0.911

H37Rv_KO_CtpD

-0.35

-0.193

H37Rv_KO_Rv1272

-0.306

0.096

H37Rv_KO_SugABC

0.54

0.044

H37Rv_KO_MbtN

0.386

-0.44

Trans05

-1.065

0.438

macrophage_unactivated

-0.054

0.032

IL1

0.3

0.178

Rapamycin

-1.587

-0.276

Tcell

-1.766

-0.401

GMCSF

-0.541

-0.52

IFNab

-0.384

-0.157

IFNg

0.719

-0.013

IFNg_GMCSF1

-0.399

-1.043

Rv1432_day32

0.226

1.206

Rv1565c_day32

-0.297

1.128

secA2_input

-0.833

-0.911

delta_Rv3594

-0.135

-0.815

delta_Rv3717

-0.696

-0.322

delta_Rv3811

-0.382

-0.445

delta_Rv0954

0.742

0.227

PonA1

-0.076

0.007

EccD1_KO

-0.076

0.299

EspI_KO

-0.827

0.505

PE35_KO

-1.747

0.055

PPE68_KO

-0.442

0.061

glycerol2

0.0

0.471

lignocerate

-1.011

-0.419

oleate

-0.425

0.922

phosphatidylcholine

0.399

0.0

acetate

-1.25

-0.552

glucAc

-1.735

-1.291

Rv0950ko

-0.401

0.648

Rv1096ko

-0.217

-0.377

Rv3684ko

0.783

-1.113

delta_otsA_trehalose

0.564

0.758