Top 10 genes with highest correlation to Rv3224A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1987/- | (cc=0.5435) | info on Rv1987/- |
| Rv2587c/secD | (cc=0.5371) | info on Rv2587c/secD |
| Rv3224B/- | (cc=0.5299) | info on Rv3224B/- |
| Rv0590A/- | (cc=0.5244) | info on Rv0590A/- |
| Rv0312/- | (cc=0.5095) | info on Rv0312/- |
| Rv1738/- | (cc=0.507) | info on Rv1738/- |
| Rv0060/- | (cc=0.5002) | info on Rv0060/- |
| Rv0945/- | (cc=0.4933) | info on Rv0945/- |
| Rv0432/sodC | (cc=0.4855) | info on Rv0432/sodC |
| Rv2621c/- | (cc=0.4754) | info on Rv2621c/- |
Correlation of Rv3224A/- with Rv3224B/-
Normalized LFCs for Rv3224A/-:
(description and provenance of datasets)
| Rv3224A/- | Rv3224B/- | |
| Fe_supp_jason_reseq | 2.797 | 1.613 |
| low_pH_jason_reseq | -0.599 | 0.582 |
| NO_jason_reseq | -1.725 | 1.003 |
| B6_jason_reseq | -2.259 | 1.336 |
| MHCII_jason_reseq | -1.515 | -0.043 |
| Isoniazid02 | 0.358 | 0.0 |
| Rifampicin4 | -1.013 | 0.43 |
| Ethambutol3 | -0.423 | -0.204 |
| Meropenem3 | -0.025 | 2.432 |
| Vancomycin16 | 0.0 | -0.202 |
| Rv2680_day32 | 2.963 | 1.574 |
| H37Rv_KO_MarP | 0.035 | -0.34 |
| hypoxia_3wks | -1.758 | -1.798 |
| hypoxia_6wks | -1.142 | -0.764 |
| glycerol | -1.769 | -1.318 |
| cholesterol | 0.329 | -0.644 |
| AJ | -1.153 | 0.338 |
| Bibs02 | -1.999 | 1.041 |
| Bibs02c | -1.238 | 0.32 |
| BL6 | 1.287 | 2.331 |
| BL6a | -0.366 | 0.016 |
| BXD01 | 1.298 | 0.306 |
| BXD010 | -0.074 | -0.741 |
| BXD011 | 0.2 | -0.167 |
| BXD03 | 1.017 | 0.361 |
| BXD04 | -1.167 | 0.999 |
| BXD05 | -0.249 | -0.022 |
| BXD06 | -0.293 | -0.239 |
| BXD07 | 0.983 | 0.12 |
| BXD08 | 0.846 | 0.422 |
| BXD09 | -0.213 | -0.917 |
| CAST | -1.482 | 0.384 |
| CCcont | 2.065 | 0.0 |
| DS01 | 0.932 | -0.905 |
| DS02 | -2.757 | 0.156 |
| DS04 | 0.84 | -1.487 |
| DS0c | -2.203 | -1.483 |
| GP01 | 1.272 | 0.393 |
| GP02 | -0.91 | -1.146 |
| GP0c | 1.505 | 0.18 |
| NOD | -1.826 | -0.037 |
| NZO | -2.728 | 0.829 |
| PWK | -1.718 | -0.134 |
| H37Rv_KO_CtpC | -2.222 | -1.011 |
| H37Rv_KO_CtpD | 2.993 | 2.225 |
| H37Rv_KO_Rv1272 | 1.746 | -1.207 |
| H37Rv_KO_SugABC | -1.083 | -0.776 |
| H37Rv_KO_MbtN | -1.127 | 0.961 |
| Trans05 | -0.649 | 0.957 |
| macrophage_unactivated | 0.0 | 1.285 |
| IL1 | -4.108 | -1.99 |
| Rapamycin | -1.182 | -0.546 |
| Tcell | 1.147 | 1.942 |
| GMCSF | 0.457 | -0.784 |
| IFNab | 2.038 | -0.426 |
| IFNg | 0.676 | 0.583 |
| IFNg_GMCSF1 | -0.619 | -1.2 |
| Rv1432_day32 | 0.0 | 0.321 |
| Rv1565c_day32 | -1.403 | -1.093 |
| secA2_input | 0.16 | 0.167 |
| delta_Rv3594 | 3.02 | 0.382 |
| delta_Rv3717 | 0.405 | -1.565 |
| delta_Rv3811 | 3.359 | 1.008 |
| delta_Rv0954 | -1.742 | 0.27 |
| PonA1 | -1.714 | -0.851 |
| EccD1_KO | 0.076 | -1.092 |
| EspI_KO | -2.125 | -2.738 |
| PE35_KO | -0.353 | -2.033 |
| PPE68_KO | -0.387 | -0.749 |
| glycerol2 | 3.333 | 2.191 |
| lignocerate | 3.899 | 2.565 |
| oleate | 0.0 | -1.167 |
| phosphatidylcholine | 3.332 | 2.333 |
| acetate | 4.833 | 3.501 |
| glucAc | 3.575 | 2.476 |
| Rv0950ko | 3.015 | 0.112 |
| Rv1096ko | 2.91 | 0.531 |
| Rv3684ko | 3.331 | 0.062 |
| delta_otsA_trehalose | -2.329 | -0.835 |