Top 10 genes with highest correlation to Rv3224A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1987/- | (cc=0.5435) | info on Rv1987/- |
| Rv2587c/secD | (cc=0.5371) | info on Rv2587c/secD |
| Rv3224B/- | (cc=0.5299) | info on Rv3224B/- |
| Rv0590A/- | (cc=0.5244) | info on Rv0590A/- |
| Rv0312/- | (cc=0.5095) | info on Rv0312/- |
| Rv1738/- | (cc=0.507) | info on Rv1738/- |
| Rv0060/- | (cc=0.5002) | info on Rv0060/- |
| Rv0945/- | (cc=0.4933) | info on Rv0945/- |
| Rv0432/sodC | (cc=0.4855) | info on Rv0432/sodC |
| Rv2621c/- | (cc=0.4754) | info on Rv2621c/- |
Correlation of Rv3224A/- with Rv0312/-
Normalized LFCs for Rv3224A/-:
(description and provenance of datasets)
| Rv3224A/- | Rv0312/- | |
| Fe_supp_jason_reseq | 2.797 | 0.638 |
| low_pH_jason_reseq | -0.599 | 0.331 |
| NO_jason_reseq | -1.725 | -0.113 |
| B6_jason_reseq | -2.259 | 0.135 |
| MHCII_jason_reseq | -1.515 | 0.678 |
| Isoniazid02 | 0.358 | 0.533 |
| Rifampicin4 | -1.013 | -2.296 |
| Ethambutol3 | -0.423 | 0.942 |
| Meropenem3 | -0.025 | -0.386 |
| Vancomycin16 | 0.0 | -2.406 |
| Rv2680_day32 | 2.963 | -1.374 |
| H37Rv_KO_MarP | 0.035 | 0.181 |
| hypoxia_3wks | -1.758 | -1.467 |
| hypoxia_6wks | -1.142 | -0.867 |
| glycerol | -1.769 | 0.619 |
| cholesterol | 0.329 | 0.223 |
| AJ | -1.153 | -0.771 |
| Bibs02 | -1.999 | 0.686 |
| Bibs02c | -1.238 | 0.235 |
| BL6 | 1.287 | 0.49 |
| BL6a | -0.366 | 0.264 |
| BXD01 | 1.298 | -0.476 |
| BXD010 | -0.074 | 0.897 |
| BXD011 | 0.2 | 0.297 |
| BXD03 | 1.017 | 0.263 |
| BXD04 | -1.167 | -0.156 |
| BXD05 | -0.249 | -0.135 |
| BXD06 | -0.293 | -0.168 |
| BXD07 | 0.983 | -0.46 |
| BXD08 | 0.846 | -0.358 |
| BXD09 | -0.213 | -0.216 |
| CAST | -1.482 | 0.402 |
| CCcont | 2.065 | 0.746 |
| DS01 | 0.932 | -0.056 |
| DS02 | -2.757 | -0.274 |
| DS04 | 0.84 | -1.228 |
| DS0c | -2.203 | -0.052 |
| GP01 | 1.272 | -0.396 |
| GP02 | -0.91 | 0.255 |
| GP0c | 1.505 | -0.614 |
| NOD | -1.826 | -1.147 |
| NZO | -2.728 | -1.019 |
| PWK | -1.718 | -1.159 |
| H37Rv_KO_CtpC | -2.222 | -0.12 |
| H37Rv_KO_CtpD | 2.993 | -0.03 |
| H37Rv_KO_Rv1272 | 1.746 | -1.022 |
| H37Rv_KO_SugABC | -1.083 | 0.286 |
| H37Rv_KO_MbtN | -1.127 | -0.85 |
| Trans05 | -0.649 | -1.147 |
| macrophage_unactivated | 0.0 | -0.489 |
| IL1 | -4.108 | -0.658 |
| Rapamycin | -1.182 | 0.178 |
| Tcell | 1.147 | 0.094 |
| GMCSF | 0.457 | 0.227 |
| IFNab | 2.038 | -0.372 |
| IFNg | 0.676 | 0.0 |
| IFNg_GMCSF1 | -0.619 | -0.591 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | -1.403 | 0.0 |
| secA2_input | 0.16 | 0.0 |
| delta_Rv3594 | 3.02 | 0.646 |
| delta_Rv3717 | 0.405 | 0.505 |
| delta_Rv3811 | 3.359 | 0.752 |
| delta_Rv0954 | -1.742 | -0.115 |
| PonA1 | -1.714 | 0.653 |
| EccD1_KO | 0.076 | -1.016 |
| EspI_KO | -2.125 | -1.135 |
| PE35_KO | -0.353 | -1.228 |
| PPE68_KO | -0.387 | -0.921 |
| glycerol2 | 3.333 | 2.019 |
| lignocerate | 3.899 | 2.557 |
| oleate | 0.0 | -0.315 |
| phosphatidylcholine | 3.332 | 2.07 |
| acetate | 4.833 | 3.325 |
| glucAc | 3.575 | 2.617 |
| Rv0950ko | 3.015 | 1.668 |
| Rv1096ko | 2.91 | 0.875 |
| Rv3684ko | 3.331 | 0.684 |
| delta_otsA_trehalose | -2.329 | 0.079 |