Top 10 genes with highest correlation to Rv3224A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1987/- | (cc=0.5435) | info on Rv1987/- |
| Rv2587c/secD | (cc=0.5371) | info on Rv2587c/secD |
| Rv3224B/- | (cc=0.5299) | info on Rv3224B/- |
| Rv0590A/- | (cc=0.5244) | info on Rv0590A/- |
| Rv0312/- | (cc=0.5095) | info on Rv0312/- |
| Rv1738/- | (cc=0.507) | info on Rv1738/- |
| Rv0060/- | (cc=0.5002) | info on Rv0060/- |
| Rv0945/- | (cc=0.4933) | info on Rv0945/- |
| Rv0432/sodC | (cc=0.4855) | info on Rv0432/sodC |
| Rv2621c/- | (cc=0.4754) | info on Rv2621c/- |
Correlation of Rv3224A/- with Rv0432/sodC
Normalized LFCs for Rv3224A/-:
(description and provenance of datasets)
| Rv3224A/- | Rv0432/sodC | |
| Fe_supp_jason_reseq | 2.797 | 0.606 |
| low_pH_jason_reseq | -0.599 | 0.609 |
| NO_jason_reseq | -1.725 | 0.289 |
| B6_jason_reseq | -2.259 | -1.779 |
| MHCII_jason_reseq | -1.515 | -1.466 |
| Isoniazid02 | 0.358 | -0.554 |
| Rifampicin4 | -1.013 | -1.752 |
| Ethambutol3 | -0.423 | -0.255 |
| Meropenem3 | -0.025 | -0.546 |
| Vancomycin16 | 0.0 | -1.21 |
| Rv2680_day32 | 2.963 | 0.147 |
| H37Rv_KO_MarP | 0.035 | 0.262 |
| hypoxia_3wks | -1.758 | -1.332 |
| hypoxia_6wks | -1.142 | -1.234 |
| glycerol | -1.769 | -0.696 |
| cholesterol | 0.329 | -0.31 |
| AJ | -1.153 | -1.519 |
| Bibs02 | -1.999 | -0.705 |
| Bibs02c | -1.238 | -0.762 |
| BL6 | 1.287 | 0.12 |
| BL6a | -0.366 | -0.257 |
| BXD01 | 1.298 | -0.753 |
| BXD010 | -0.074 | 0.518 |
| BXD011 | 0.2 | -0.25 |
| BXD03 | 1.017 | -0.886 |
| BXD04 | -1.167 | -1.171 |
| BXD05 | -0.249 | -1.014 |
| BXD06 | -0.293 | -0.382 |
| BXD07 | 0.983 | -0.061 |
| BXD08 | 0.846 | -0.54 |
| BXD09 | -0.213 | -0.062 |
| CAST | -1.482 | -1.91 |
| CCcont | 2.065 | 0.402 |
| DS01 | 0.932 | -1.745 |
| DS02 | -2.757 | -0.602 |
| DS04 | 0.84 | -1.872 |
| DS0c | -2.203 | -1.226 |
| GP01 | 1.272 | -0.292 |
| GP02 | -0.91 | -0.491 |
| GP0c | 1.505 | 0.254 |
| NOD | -1.826 | -1.298 |
| NZO | -2.728 | -0.21 |
| PWK | -1.718 | -1.823 |
| H37Rv_KO_CtpC | -2.222 | -0.42 |
| H37Rv_KO_CtpD | 2.993 | 0.185 |
| H37Rv_KO_Rv1272 | 1.746 | -0.697 |
| H37Rv_KO_SugABC | -1.083 | 0.609 |
| H37Rv_KO_MbtN | -1.127 | -0.345 |
| Trans05 | -0.649 | -1.436 |
| macrophage_unactivated | 0.0 | -0.833 |
| IL1 | -4.108 | 0.587 |
| Rapamycin | -1.182 | 0.11 |
| Tcell | 1.147 | 0.117 |
| GMCSF | 0.457 | -0.177 |
| IFNab | 2.038 | 0.193 |
| IFNg | 0.676 | 0.826 |
| IFNg_GMCSF1 | -0.619 | 0.113 |
| Rv1432_day32 | 0.0 | -1.246 |
| Rv1565c_day32 | -1.403 | -2.504 |
| secA2_input | 0.16 | -0.985 |
| delta_Rv3594 | 3.02 | 0.333 |
| delta_Rv3717 | 0.405 | -0.092 |
| delta_Rv3811 | 3.359 | 0.739 |
| delta_Rv0954 | -1.742 | 0.078 |
| PonA1 | -1.714 | 0.615 |
| EccD1_KO | 0.076 | -0.829 |
| EspI_KO | -2.125 | -0.95 |
| PE35_KO | -0.353 | -1.604 |
| PPE68_KO | -0.387 | -1.315 |
| glycerol2 | 3.333 | 0.464 |
| lignocerate | 3.899 | 0.991 |
| oleate | 0.0 | -0.44 |
| phosphatidylcholine | 3.332 | 1.158 |
| acetate | 4.833 | 1.049 |
| glucAc | 3.575 | 0.668 |
| Rv0950ko | 3.015 | 0.479 |
| Rv1096ko | 2.91 | 0.721 |
| Rv3684ko | 3.331 | 0.37 |
| delta_otsA_trehalose | -2.329 | 0.849 |