Top 10 genes with highest correlation to Rv3224A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1987/- | (cc=0.5435) | info on Rv1987/- |
| Rv2587c/secD | (cc=0.5371) | info on Rv2587c/secD |
| Rv3224B/- | (cc=0.5299) | info on Rv3224B/- |
| Rv0590A/- | (cc=0.5244) | info on Rv0590A/- |
| Rv0312/- | (cc=0.5095) | info on Rv0312/- |
| Rv1738/- | (cc=0.507) | info on Rv1738/- |
| Rv0060/- | (cc=0.5002) | info on Rv0060/- |
| Rv0945/- | (cc=0.4933) | info on Rv0945/- |
| Rv0432/sodC | (cc=0.4855) | info on Rv0432/sodC |
| Rv2621c/- | (cc=0.4754) | info on Rv2621c/- |
Correlation of Rv3224A/- with Rv1987/-
Normalized LFCs for Rv3224A/-:
(description and provenance of datasets)
| Rv3224A/- | Rv1987/- | |
| Fe_supp_jason_reseq | 2.797 | 0.813 |
| low_pH_jason_reseq | -0.599 | -0.965 |
| NO_jason_reseq | -1.725 | -0.761 |
| B6_jason_reseq | -2.259 | 0.082 |
| MHCII_jason_reseq | -1.515 | -0.367 |
| Isoniazid02 | 0.358 | -0.346 |
| Rifampicin4 | -1.013 | -0.709 |
| Ethambutol3 | -0.423 | -0.343 |
| Meropenem3 | -0.025 | -0.765 |
| Vancomycin16 | 0.0 | -0.053 |
| Rv2680_day32 | 2.963 | 0.985 |
| H37Rv_KO_MarP | 0.035 | -0.008 |
| hypoxia_3wks | -1.758 | -1.025 |
| hypoxia_6wks | -1.142 | -0.265 |
| glycerol | -1.769 | -0.933 |
| cholesterol | 0.329 | -0.517 |
| AJ | -1.153 | -0.679 |
| Bibs02 | -1.999 | 0.878 |
| Bibs02c | -1.238 | 0.697 |
| BL6 | 1.287 | 0.885 |
| BL6a | -0.366 | 0.422 |
| BXD01 | 1.298 | 0.19 |
| BXD010 | -0.074 | 0.059 |
| BXD011 | 0.2 | 0.262 |
| BXD03 | 1.017 | 0.478 |
| BXD04 | -1.167 | 0.068 |
| BXD05 | -0.249 | 0.698 |
| BXD06 | -0.293 | 0.355 |
| BXD07 | 0.983 | 0.167 |
| BXD08 | 0.846 | 0.438 |
| BXD09 | -0.213 | 0.363 |
| CAST | -1.482 | -0.289 |
| CCcont | 2.065 | 1.188 |
| DS01 | 0.932 | 0.183 |
| DS02 | -2.757 | -0.072 |
| DS04 | 0.84 | 0.572 |
| DS0c | -2.203 | -0.083 |
| GP01 | 1.272 | 0.187 |
| GP02 | -0.91 | -0.69 |
| GP0c | 1.505 | -0.935 |
| NOD | -1.826 | -0.295 |
| NZO | -2.728 | -0.767 |
| PWK | -1.718 | -0.163 |
| H37Rv_KO_CtpC | -2.222 | 0.154 |
| H37Rv_KO_CtpD | 2.993 | 1.731 |
| H37Rv_KO_Rv1272 | 1.746 | 0.848 |
| H37Rv_KO_SugABC | -1.083 | 1.386 |
| H37Rv_KO_MbtN | -1.127 | -0.315 |
| Trans05 | -0.649 | 0.03 |
| macrophage_unactivated | 0.0 | 0.265 |
| IL1 | -4.108 | 0.409 |
| Rapamycin | -1.182 | 0.69 |
| Tcell | 1.147 | -0.541 |
| GMCSF | 0.457 | 0.393 |
| IFNab | 2.038 | 0.242 |
| IFNg | 0.676 | 0.398 |
| IFNg_GMCSF1 | -0.619 | 0.795 |
| Rv1432_day32 | 0.0 | 0.194 |
| Rv1565c_day32 | -1.403 | 0.117 |
| secA2_input | 0.16 | -0.418 |
| delta_Rv3594 | 3.02 | 1.086 |
| delta_Rv3717 | 0.405 | 0.703 |
| delta_Rv3811 | 3.359 | 0.747 |
| delta_Rv0954 | -1.742 | 1.417 |
| PonA1 | -1.714 | -0.212 |
| EccD1_KO | 0.076 | -0.615 |
| EspI_KO | -2.125 | -0.331 |
| PE35_KO | -0.353 | -0.079 |
| PPE68_KO | -0.387 | 0.214 |
| glycerol2 | 3.333 | 2.285 |
| lignocerate | 3.899 | 2.814 |
| oleate | 0.0 | -1.163 |
| phosphatidylcholine | 3.332 | 2.129 |
| acetate | 4.833 | 2.72 |
| glucAc | 3.575 | 2.553 |
| Rv0950ko | 3.015 | 0.033 |
| Rv1096ko | 2.91 | -0.549 |
| Rv3684ko | 3.331 | -0.416 |
| delta_otsA_trehalose | -2.329 | 0.021 |