Top 10 genes with highest correlation to Rv3220c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1626/- | (cc=0.8863) | info on Rv1626/- |
| Rv0554/bpoC | (cc=0.5784) | info on Rv0554/bpoC |
| Rv2684/arsA | (cc=0.5617) | info on Rv2684/arsA |
| Rv0270/fadD2 | (cc=0.5348) | info on Rv0270/fadD2 |
| Rv2752c/- | (cc=0.5152) | info on Rv2752c/- |
| Rv3136/PPE51 | (cc=0.4992) | info on Rv3136/PPE51 |
| Rv2334/cysK1 | (cc=0.4636) | info on Rv2334/cysK1 |
| Rv3716c/- | (cc=0.4507) | info on Rv3716c/- |
| Rv1206/fadD6 | (cc=0.4484) | info on Rv1206/fadD6 |
| Rv2683/- | (cc=0.4368) | info on Rv2683/- |
Correlation of Rv3220c/- with Rv3716c/-
Normalized LFCs for Rv3220c/-:
(description and provenance of datasets)
| Rv3220c/- | Rv3716c/- | |
| Fe_supp_jason_reseq | 0.335 | 3.138 |
| low_pH_jason_reseq | 3.333 | 1.591 |
| NO_jason_reseq | 2.103 | 0.895 |
| B6_jason_reseq | 0.869 | 2.66 |
| MHCII_jason_reseq | -3.58 | 2.121 |
| Isoniazid02 | 1.884 | 2.346 |
| Rifampicin4 | -2.819 | 0.374 |
| Ethambutol3 | -0.972 | 0.761 |
| Meropenem3 | 5.59 | 6.0 |
| Vancomycin16 | -5.064 | -2.141 |
| Rv2680_day32 | -0.672 | -2.57 |
| H37Rv_KO_MarP | -0.78 | -0.395 |
| hypoxia_3wks | -4.147 | -1.188 |
| hypoxia_6wks | -3.942 | 1.169 |
| glycerol | 0.892 | -2.477 |
| cholesterol | -0.31 | -2.776 |
| AJ | -1.457 | -1.205 |
| Bibs02 | -3.649 | -1.425 |
| Bibs02c | -3.363 | -2.137 |
| BL6 | -2.872 | -2.064 |
| BL6a | -2.369 | -2.765 |
| BXD01 | -0.493 | -1.156 |
| BXD010 | -0.787 | -1.506 |
| BXD011 | -0.648 | -2.485 |
| BXD03 | -1.948 | -1.567 |
| BXD04 | -0.288 | -1.228 |
| BXD05 | -2.264 | -1.964 |
| BXD06 | -0.311 | -1.709 |
| BXD07 | -1.497 | 0.587 |
| BXD08 | 0.137 | -1.397 |
| BXD09 | -0.985 | -1.396 |
| CAST | -1.029 | 0.225 |
| CCcont | -0.565 | -0.83 |
| DS01 | -2.171 | -2.096 |
| DS02 | -0.947 | -1.484 |
| DS04 | -2.571 | -0.891 |
| DS0c | -2.035 | -2.586 |
| GP01 | -2.686 | -1.604 |
| GP02 | -2.263 | 0.861 |
| GP0c | -3.537 | -2.289 |
| NOD | -1.142 | -0.513 |
| NZO | 0.091 | -1.77 |
| PWK | -1.628 | -1.144 |
| H37Rv_KO_CtpC | -0.953 | -2.02 |
| H37Rv_KO_CtpD | -1.545 | -3.303 |
| H37Rv_KO_Rv1272 | -2.97 | -3.773 |
| H37Rv_KO_SugABC | -2.086 | -2.253 |
| H37Rv_KO_MbtN | -1.657 | -2.085 |
| Trans05 | -2.416 | -2.972 |
| macrophage_unactivated | -2.011 | -3.857 |
| IL1 | -3.283 | -1.735 |
| Rapamycin | -3.397 | -3.284 |
| Tcell | 0.772 | -1.378 |
| GMCSF | -1.476 | -2.35 |
| IFNab | -2.44 | -4.792 |
| IFNg | -2.405 | 0.0 |
| IFNg_GMCSF1 | 0.0 | -1.427 |
| Rv1432_day32 | 0.415 | 0.0 |
| Rv1565c_day32 | 0.0 | -0.766 |
| secA2_input | 0.449 | -0.319 |
| delta_Rv3594 | -4.309 | -1.19 |
| delta_Rv3717 | -2.752 | -1.114 |
| delta_Rv3811 | -4.348 | -0.355 |
| delta_Rv0954 | -2.283 | 0.612 |
| PonA1 | -2.039 | 0.864 |
| EccD1_KO | -0.566 | -0.727 |
| EspI_KO | -0.376 | -3.514 |
| PE35_KO | 0.353 | -1.779 |
| PPE68_KO | 0.224 | -2.297 |
| glycerol2 | -1.813 | -3.513 |
| lignocerate | -2.53 | -2.819 |
| oleate | -0.856 | -4.599 |
| phosphatidylcholine | -2.504 | -2.457 |
| acetate | 0.843 | 1.711 |
| glucAc | 0.8 | 0.9 |
| Rv0950ko | 0.419 | 0.76 |
| Rv1096ko | -2.325 | 0.063 |
| Rv3684ko | 0.498 | 1.821 |
| delta_otsA_trehalose | 0.201 | -0.667 |