Top 10 genes with highest correlation to Rv3220c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1626/- | (cc=0.8863) | info on Rv1626/- |
| Rv0554/bpoC | (cc=0.5784) | info on Rv0554/bpoC |
| Rv2684/arsA | (cc=0.5617) | info on Rv2684/arsA |
| Rv0270/fadD2 | (cc=0.5348) | info on Rv0270/fadD2 |
| Rv2752c/- | (cc=0.5152) | info on Rv2752c/- |
| Rv3136/PPE51 | (cc=0.4992) | info on Rv3136/PPE51 |
| Rv2334/cysK1 | (cc=0.4636) | info on Rv2334/cysK1 |
| Rv3716c/- | (cc=0.4507) | info on Rv3716c/- |
| Rv1206/fadD6 | (cc=0.4484) | info on Rv1206/fadD6 |
| Rv2683/- | (cc=0.4368) | info on Rv2683/- |
Correlation of Rv3220c/- with Rv1626/-
Normalized LFCs for Rv3220c/-:
(description and provenance of datasets)
| Rv3220c/- | Rv1626/- | |
| Fe_supp_jason_reseq | 0.335 | 2.876 |
| low_pH_jason_reseq | 3.333 | 4.067 |
| NO_jason_reseq | 2.103 | 1.609 |
| B6_jason_reseq | 0.869 | 1.895 |
| MHCII_jason_reseq | -3.58 | -2.872 |
| Isoniazid02 | 1.884 | 4.119 |
| Rifampicin4 | -2.819 | -3.097 |
| Ethambutol3 | -0.972 | 1.474 |
| Meropenem3 | 5.59 | 6.0 |
| Vancomycin16 | -5.064 | -3.125 |
| Rv2680_day32 | -0.672 | -0.717 |
| H37Rv_KO_MarP | -0.78 | -1.476 |
| hypoxia_3wks | -4.147 | -4.717 |
| hypoxia_6wks | -3.942 | -4.825 |
| glycerol | 0.892 | 1.24 |
| cholesterol | -0.31 | -4.059 |
| AJ | -1.457 | -0.706 |
| Bibs02 | -3.649 | -3.592 |
| Bibs02c | -3.363 | -3.577 |
| BL6 | -2.872 | -3.611 |
| BL6a | -2.369 | -1.617 |
| BXD01 | -0.493 | 0.254 |
| BXD010 | -0.787 | -0.289 |
| BXD011 | -0.648 | -0.668 |
| BXD03 | -1.948 | -0.614 |
| BXD04 | -0.288 | 1.571 |
| BXD05 | -2.264 | -1.067 |
| BXD06 | -0.311 | 0.267 |
| BXD07 | -1.497 | -0.452 |
| BXD08 | 0.137 | 1.253 |
| BXD09 | -0.985 | 0.293 |
| CAST | -1.029 | -1.028 |
| CCcont | -0.565 | -1.033 |
| DS01 | -2.171 | -2.197 |
| DS02 | -0.947 | -1.327 |
| DS04 | -2.571 | -3.159 |
| DS0c | -2.035 | -2.329 |
| GP01 | -2.686 | -3.038 |
| GP02 | -2.263 | -2.56 |
| GP0c | -3.537 | -4.001 |
| NOD | -1.142 | -0.89 |
| NZO | 0.091 | 0.896 |
| PWK | -1.628 | -0.611 |
| H37Rv_KO_CtpC | -0.953 | -0.852 |
| H37Rv_KO_CtpD | -1.545 | -1.112 |
| H37Rv_KO_Rv1272 | -2.97 | -2.989 |
| H37Rv_KO_SugABC | -2.086 | -2.776 |
| H37Rv_KO_MbtN | -1.657 | -1.335 |
| Trans05 | -2.416 | -2.883 |
| macrophage_unactivated | -2.011 | -1.146 |
| IL1 | -3.283 | -4.043 |
| Rapamycin | -3.397 | -4.864 |
| Tcell | 0.772 | 1.352 |
| GMCSF | -1.476 | -0.333 |
| IFNab | -2.44 | -1.769 |
| IFNg | -2.405 | -2.464 |
| IFNg_GMCSF1 | 0.0 | 2.083 |
| Rv1432_day32 | 0.415 | 1.411 |
| Rv1565c_day32 | 0.0 | 0.0 |
| secA2_input | 0.449 | 0.645 |
| delta_Rv3594 | -4.309 | -5.025 |
| delta_Rv3717 | -2.752 | -3.666 |
| delta_Rv3811 | -4.348 | -4.571 |
| delta_Rv0954 | -2.283 | -3.008 |
| PonA1 | -2.039 | -2.006 |
| EccD1_KO | -0.566 | -0.24 |
| EspI_KO | -0.376 | -0.653 |
| PE35_KO | 0.353 | 0.201 |
| PPE68_KO | 0.224 | 1.293 |
| glycerol2 | -1.813 | -2.83 |
| lignocerate | -2.53 | -4.71 |
| oleate | -0.856 | -0.384 |
| phosphatidylcholine | -2.504 | -3.109 |
| acetate | 0.843 | -1.383 |
| glucAc | 0.8 | -1.649 |
| Rv0950ko | 0.419 | 0.308 |
| Rv1096ko | -2.325 | -3.893 |
| Rv3684ko | 0.498 | 0.429 |
| delta_otsA_trehalose | 0.201 | 1.159 |