Top 10 genes with highest correlation to Rv3220c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1626/- | (cc=0.8863) | info on Rv1626/- |
| Rv0554/bpoC | (cc=0.5784) | info on Rv0554/bpoC |
| Rv2684/arsA | (cc=0.5617) | info on Rv2684/arsA |
| Rv0270/fadD2 | (cc=0.5348) | info on Rv0270/fadD2 |
| Rv2752c/- | (cc=0.5152) | info on Rv2752c/- |
| Rv3136/PPE51 | (cc=0.4992) | info on Rv3136/PPE51 |
| Rv2334/cysK1 | (cc=0.4636) | info on Rv2334/cysK1 |
| Rv3716c/- | (cc=0.4507) | info on Rv3716c/- |
| Rv1206/fadD6 | (cc=0.4484) | info on Rv1206/fadD6 |
| Rv2683/- | (cc=0.4368) | info on Rv2683/- |
Correlation of Rv3220c/- with Rv0554/bpoC
Normalized LFCs for Rv3220c/-:
(description and provenance of datasets)
| Rv3220c/- | Rv0554/bpoC | |
| Fe_supp_jason_reseq | 0.335 | -0.069 |
| low_pH_jason_reseq | 3.333 | 2.332 |
| NO_jason_reseq | 2.103 | 1.457 |
| B6_jason_reseq | 0.869 | 1.771 |
| MHCII_jason_reseq | -3.58 | -2.262 |
| Isoniazid02 | 1.884 | 0.055 |
| Rifampicin4 | -2.819 | -0.382 |
| Ethambutol3 | -0.972 | -0.212 |
| Meropenem3 | 5.59 | 0.506 |
| Vancomycin16 | -5.064 | 0.844 |
| Rv2680_day32 | -0.672 | -1.682 |
| H37Rv_KO_MarP | -0.78 | 1.099 |
| hypoxia_3wks | -4.147 | -4.506 |
| hypoxia_6wks | -3.942 | -4.803 |
| glycerol | 0.892 | 1.349 |
| cholesterol | -0.31 | 1.172 |
| AJ | -1.457 | 1.54 |
| Bibs02 | -3.649 | -2.311 |
| Bibs02c | -3.363 | -2.501 |
| BL6 | -2.872 | -0.478 |
| BL6a | -2.369 | -0.375 |
| BXD01 | -0.493 | 0.563 |
| BXD010 | -0.787 | -0.21 |
| BXD011 | -0.648 | -0.697 |
| BXD03 | -1.948 | -0.924 |
| BXD04 | -0.288 | -0.73 |
| BXD05 | -2.264 | -0.338 |
| BXD06 | -0.311 | 0.382 |
| BXD07 | -1.497 | -0.581 |
| BXD08 | 0.137 | -0.258 |
| BXD09 | -0.985 | -0.369 |
| CAST | -1.029 | 1.758 |
| CCcont | -0.565 | -0.784 |
| DS01 | -2.171 | 0.756 |
| DS02 | -0.947 | 1.07 |
| DS04 | -2.571 | 0.446 |
| DS0c | -2.035 | 0.355 |
| GP01 | -2.686 | -2.41 |
| GP02 | -2.263 | -2.107 |
| GP0c | -3.537 | -3.812 |
| NOD | -1.142 | 1.622 |
| NZO | 0.091 | 1.36 |
| PWK | -1.628 | 0.234 |
| H37Rv_KO_CtpC | -0.953 | 1.234 |
| H37Rv_KO_CtpD | -1.545 | 0.128 |
| H37Rv_KO_Rv1272 | -2.97 | -0.317 |
| H37Rv_KO_SugABC | -2.086 | -0.823 |
| H37Rv_KO_MbtN | -1.657 | -1.683 |
| Trans05 | -2.416 | -0.771 |
| macrophage_unactivated | -2.011 | 1.026 |
| IL1 | -3.283 | -1.661 |
| Rapamycin | -3.397 | -2.194 |
| Tcell | 0.772 | 3.891 |
| GMCSF | -1.476 | -4.906 |
| IFNab | -2.44 | -6.0 |
| IFNg | -2.405 | -4.105 |
| IFNg_GMCSF1 | 0.0 | -1.049 |
| Rv1432_day32 | 0.415 | -1.813 |
| Rv1565c_day32 | 0.0 | 0.248 |
| secA2_input | 0.449 | -0.158 |
| delta_Rv3594 | -4.309 | -4.812 |
| delta_Rv3717 | -2.752 | -4.394 |
| delta_Rv3811 | -4.348 | -4.921 |
| delta_Rv0954 | -2.283 | -2.084 |
| PonA1 | -2.039 | -0.771 |
| EccD1_KO | -0.566 | 0.697 |
| EspI_KO | -0.376 | 1.107 |
| PE35_KO | 0.353 | 0.753 |
| PPE68_KO | 0.224 | 0.461 |
| glycerol2 | -1.813 | -0.356 |
| lignocerate | -2.53 | 0.041 |
| oleate | -0.856 | 0.22 |
| phosphatidylcholine | -2.504 | 0.207 |
| acetate | 0.843 | 0.432 |
| glucAc | 0.8 | 0.168 |
| Rv0950ko | 0.419 | 1.556 |
| Rv1096ko | -2.325 | 0.847 |
| Rv3684ko | 0.498 | 2.515 |
| delta_otsA_trehalose | 0.201 | 0.165 |