Top 10 genes with highest correlation to Rv3218/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3050c/- | (cc=0.777) | info on Rv3050c/- |
| Rv1925/fadD31 | (cc=0.7367) | info on Rv1925/fadD31 |
| Rv0928/pstS3 | (cc=0.714) | info on Rv0928/pstS3 |
| Rv0930/pstA1 | (cc=0.7112) | info on Rv0930/pstA1 |
| Rv0642c/mmaA4 | (cc=0.7064) | info on Rv0642c/mmaA4 |
| Rv0929/pstC2 | (cc=0.7014) | info on Rv0929/pstC2 |
| Rv0820/phoT | (cc=0.6826) | info on Rv0820/phoT |
| Rv1239c/corA | (cc=0.6806) | info on Rv1239c/corA |
| Rv2430c/PPE41 | (cc=0.6791) | info on Rv2430c/PPE41 |
| Rv1335/cysO | (cc=0.6776) | info on Rv1335/cysO |
Correlation of Rv3218/- with Rv1335/cysO
Normalized LFCs for Rv3218/-:
(description and provenance of datasets)
| Rv3218/- | Rv1335/cysO | |
| Fe_supp_jason_reseq | 0.069 | -0.205 |
| low_pH_jason_reseq | 0.626 | 1.85 |
| NO_jason_reseq | -0.039 | 1.273 |
| B6_jason_reseq | 0.103 | 1.058 |
| MHCII_jason_reseq | -0.977 | -0.572 |
| Isoniazid02 | -0.997 | -0.207 |
| Rifampicin4 | -0.479 | 1.145 |
| Ethambutol3 | -0.966 | -1.267 |
| Meropenem3 | -0.543 | -0.089 |
| Vancomycin16 | -1.167 | 0.377 |
| Rv2680_day32 | 0.234 | -0.382 |
| H37Rv_KO_MarP | 0.319 | -0.628 |
| hypoxia_3wks | 0.502 | 1.547 |
| hypoxia_6wks | 0.833 | 2.76 |
| glycerol | -0.357 | -1.404 |
| cholesterol | 0.85 | -1.103 |
| AJ | -0.338 | -0.819 |
| Bibs02 | 0.211 | -0.375 |
| Bibs02c | 0.317 | 1.058 |
| BL6 | 1.984 | 1.805 |
| BL6a | 1.934 | 1.578 |
| BXD01 | 2.36 | 1.794 |
| BXD010 | 2.075 | 2.143 |
| BXD011 | 2.479 | 2.581 |
| BXD03 | 1.262 | 1.328 |
| BXD04 | 2.489 | 1.063 |
| BXD05 | 2.15 | 2.237 |
| BXD06 | 2.326 | 1.975 |
| BXD07 | 2.605 | 1.892 |
| BXD08 | 1.872 | 1.74 |
| BXD09 | 2.198 | 1.611 |
| CAST | -0.299 | -1.974 |
| CCcont | 0.557 | 0.075 |
| DS01 | -0.2 | -0.809 |
| DS02 | 0.225 | -1.09 |
| DS04 | 0.51 | 0.655 |
| DS0c | 0.303 | -0.754 |
| GP01 | 1.142 | 1.708 |
| GP02 | 1.904 | 3.674 |
| GP0c | 1.108 | 1.509 |
| NOD | -0.586 | -0.605 |
| NZO | 1.334 | 1.053 |
| PWK | 1.225 | -1.204 |
| H37Rv_KO_CtpC | 0.148 | 0.487 |
| H37Rv_KO_CtpD | 1.334 | 1.144 |
| H37Rv_KO_Rv1272 | 1.52 | 1.102 |
| H37Rv_KO_SugABC | 1.485 | 2.017 |
| H37Rv_KO_MbtN | 2.303 | 1.675 |
| Trans05 | 1.743 | 1.853 |
| macrophage_unactivated | -0.628 | -1.016 |
| IL1 | 0.561 | -0.448 |
| Rapamycin | 0.822 | 0.114 |
| Tcell | 0.075 | -0.329 |
| GMCSF | 0.906 | -1.803 |
| IFNab | 0.045 | -0.272 |
| IFNg | 0.43 | -0.275 |
| IFNg_GMCSF1 | -0.487 | -0.867 |
| Rv1432_day32 | 0.963 | 1.035 |
| Rv1565c_day32 | -0.682 | -1.854 |
| secA2_input | 0.848 | -1.025 |
| delta_Rv3594 | -0.846 | -0.289 |
| delta_Rv3717 | 0.467 | 1.003 |
| delta_Rv3811 | -0.464 | -0.083 |
| delta_Rv0954 | -0.783 | -1.016 |
| PonA1 | -0.658 | -1.772 |
| EccD1_KO | -0.516 | -0.924 |
| EspI_KO | -1.144 | 0.108 |
| PE35_KO | -0.487 | -1.68 |
| PPE68_KO | -1.245 | -1.459 |
| glycerol2 | -0.859 | -0.37 |
| lignocerate | -1.679 | -1.583 |
| oleate | -1.16 | 2.205 |
| phosphatidylcholine | -1.931 | -0.919 |
| acetate | -0.6 | 0.165 |
| glucAc | -0.508 | -0.703 |
| Rv0950ko | 0.286 | -0.163 |
| Rv1096ko | 0.0 | -0.787 |
| Rv3684ko | 0.743 | -0.233 |
| delta_otsA_trehalose | 2.083 | 1.062 |