Top 10 genes with highest correlation to Rv3218/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3050c/- | (cc=0.777) | info on Rv3050c/- |
| Rv1925/fadD31 | (cc=0.7367) | info on Rv1925/fadD31 |
| Rv0928/pstS3 | (cc=0.714) | info on Rv0928/pstS3 |
| Rv0930/pstA1 | (cc=0.7112) | info on Rv0930/pstA1 |
| Rv0642c/mmaA4 | (cc=0.7064) | info on Rv0642c/mmaA4 |
| Rv0929/pstC2 | (cc=0.7014) | info on Rv0929/pstC2 |
| Rv0820/phoT | (cc=0.6826) | info on Rv0820/phoT |
| Rv1239c/corA | (cc=0.6806) | info on Rv1239c/corA |
| Rv2430c/PPE41 | (cc=0.6791) | info on Rv2430c/PPE41 |
| Rv1335/cysO | (cc=0.6776) | info on Rv1335/cysO |
Correlation of Rv3218/- with Rv0820/phoT
Normalized LFCs for Rv3218/-:
(description and provenance of datasets)
| Rv3218/- | Rv0820/phoT | |
| Fe_supp_jason_reseq | 0.069 | -2.636 |
| low_pH_jason_reseq | 0.626 | 1.788 |
| NO_jason_reseq | -0.039 | -3.079 |
| B6_jason_reseq | 0.103 | 0.638 |
| MHCII_jason_reseq | -0.977 | -0.194 |
| Isoniazid02 | -0.997 | -1.411 |
| Rifampicin4 | -0.479 | -5.902 |
| Ethambutol3 | -0.966 | -1.638 |
| Meropenem3 | -0.543 | -3.038 |
| Vancomycin16 | -1.167 | -3.573 |
| Rv2680_day32 | 0.234 | 4.269 |
| H37Rv_KO_MarP | 0.319 | -3.993 |
| hypoxia_3wks | 0.502 | -5.69 |
| hypoxia_6wks | 0.833 | 0.699 |
| glycerol | -0.357 | 4.839 |
| cholesterol | 0.85 | 6.0 |
| AJ | -0.338 | 2.269 |
| Bibs02 | 0.211 | 3.308 |
| Bibs02c | 0.317 | 3.603 |
| BL6 | 1.984 | 6.0 |
| BL6a | 1.934 | 6.0 |
| BXD01 | 2.36 | 6.0 |
| BXD010 | 2.075 | 6.0 |
| BXD011 | 2.479 | 6.0 |
| BXD03 | 1.262 | 6.0 |
| BXD04 | 2.489 | 6.0 |
| BXD05 | 2.15 | 6.0 |
| BXD06 | 2.326 | 6.0 |
| BXD07 | 2.605 | 6.0 |
| BXD08 | 1.872 | 6.0 |
| BXD09 | 2.198 | 6.0 |
| CAST | -0.299 | 5.082 |
| CCcont | 0.557 | 4.123 |
| DS01 | -0.2 | 2.01 |
| DS02 | 0.225 | 2.773 |
| DS04 | 0.51 | 3.114 |
| DS0c | 0.303 | 3.872 |
| GP01 | 1.142 | 5.604 |
| GP02 | 1.904 | 6.0 |
| GP0c | 1.108 | 6.0 |
| NOD | -0.586 | 2.423 |
| NZO | 1.334 | 1.412 |
| PWK | 1.225 | 3.862 |
| H37Rv_KO_CtpC | 0.148 | 5.235 |
| H37Rv_KO_CtpD | 1.334 | 3.389 |
| H37Rv_KO_Rv1272 | 1.52 | 6.0 |
| H37Rv_KO_SugABC | 1.485 | 4.259 |
| H37Rv_KO_MbtN | 2.303 | 6.0 |
| Trans05 | 1.743 | 6.0 |
| macrophage_unactivated | -0.628 | -2.885 |
| IL1 | 0.561 | -3.227 |
| Rapamycin | 0.822 | -3.643 |
| Tcell | 0.075 | -2.691 |
| GMCSF | 0.906 | -3.464 |
| IFNab | 0.045 | 2.905 |
| IFNg | 0.43 | -4.444 |
| IFNg_GMCSF1 | -0.487 | -5.411 |
| Rv1432_day32 | 0.963 | 6.0 |
| Rv1565c_day32 | -0.682 | 0.033 |
| secA2_input | 0.848 | -1.417 |
| delta_Rv3594 | -0.846 | 0.159 |
| delta_Rv3717 | 0.467 | 2.69 |
| delta_Rv3811 | -0.464 | 0.544 |
| delta_Rv0954 | -0.783 | -3.826 |
| PonA1 | -0.658 | -3.418 |
| EccD1_KO | -0.516 | -1.98 |
| EspI_KO | -1.144 | -2.085 |
| PE35_KO | -0.487 | -0.56 |
| PPE68_KO | -1.245 | -1.645 |
| glycerol2 | -0.859 | -5.208 |
| lignocerate | -1.679 | -2.53 |
| oleate | -1.16 | -3.933 |
| phosphatidylcholine | -1.931 | -3.148 |
| acetate | -0.6 | -0.667 |
| glucAc | -0.508 | -0.861 |
| Rv0950ko | 0.286 | -4.363 |
| Rv1096ko | 0.0 | 1.84 |
| Rv3684ko | 0.743 | 0.249 |
| delta_otsA_trehalose | 2.083 | -0.454 |