Top 10 genes with highest correlation to Rv3218/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3050c/- | (cc=0.777) | info on Rv3050c/- |
| Rv1925/fadD31 | (cc=0.7367) | info on Rv1925/fadD31 |
| Rv0928/pstS3 | (cc=0.714) | info on Rv0928/pstS3 |
| Rv0930/pstA1 | (cc=0.7112) | info on Rv0930/pstA1 |
| Rv0642c/mmaA4 | (cc=0.7064) | info on Rv0642c/mmaA4 |
| Rv0929/pstC2 | (cc=0.7014) | info on Rv0929/pstC2 |
| Rv0820/phoT | (cc=0.6826) | info on Rv0820/phoT |
| Rv1239c/corA | (cc=0.6806) | info on Rv1239c/corA |
| Rv2430c/PPE41 | (cc=0.6791) | info on Rv2430c/PPE41 |
| Rv1335/cysO | (cc=0.6776) | info on Rv1335/cysO |
Correlation of Rv3218/- with Rv1239c/corA
Normalized LFCs for Rv3218/-:
(description and provenance of datasets)
| Rv3218/- | Rv1239c/corA | |
| Fe_supp_jason_reseq | 0.069 | -0.69 |
| low_pH_jason_reseq | 0.626 | 1.064 |
| NO_jason_reseq | -0.039 | 1.433 |
| B6_jason_reseq | 0.103 | 0.087 |
| MHCII_jason_reseq | -0.977 | -1.266 |
| Isoniazid02 | -0.997 | 0.036 |
| Rifampicin4 | -0.479 | -0.625 |
| Ethambutol3 | -0.966 | 0.0 |
| Meropenem3 | -0.543 | -1.067 |
| Vancomycin16 | -1.167 | -0.459 |
| Rv2680_day32 | 0.234 | 0.318 |
| H37Rv_KO_MarP | 0.319 | 0.505 |
| hypoxia_3wks | 0.502 | -2.117 |
| hypoxia_6wks | 0.833 | 0.848 |
| glycerol | -0.357 | 0.984 |
| cholesterol | 0.85 | 0.04 |
| AJ | -0.338 | 1.869 |
| Bibs02 | 0.211 | -0.338 |
| Bibs02c | 0.317 | -0.69 |
| BL6 | 1.984 | 1.43 |
| BL6a | 1.934 | 2.099 |
| BXD01 | 2.36 | 2.917 |
| BXD010 | 2.075 | 2.38 |
| BXD011 | 2.479 | 3.779 |
| BXD03 | 1.262 | 2.051 |
| BXD04 | 2.489 | 3.404 |
| BXD05 | 2.15 | 2.764 |
| BXD06 | 2.326 | 3.273 |
| BXD07 | 2.605 | 2.452 |
| BXD08 | 1.872 | 3.451 |
| BXD09 | 2.198 | 2.319 |
| CAST | -0.299 | 3.712 |
| CCcont | 0.557 | 0.288 |
| DS01 | -0.2 | -0.732 |
| DS02 | 0.225 | -1.182 |
| DS04 | 0.51 | 0.132 |
| DS0c | 0.303 | -0.757 |
| GP01 | 1.142 | -0.288 |
| GP02 | 1.904 | 0.034 |
| GP0c | 1.108 | 0.251 |
| NOD | -0.586 | 1.23 |
| NZO | 1.334 | 2.164 |
| PWK | 1.225 | 4.489 |
| H37Rv_KO_CtpC | 0.148 | 0.494 |
| H37Rv_KO_CtpD | 1.334 | 1.213 |
| H37Rv_KO_Rv1272 | 1.52 | 1.06 |
| H37Rv_KO_SugABC | 1.485 | 1.269 |
| H37Rv_KO_MbtN | 2.303 | 0.732 |
| Trans05 | 1.743 | 1.737 |
| macrophage_unactivated | -0.628 | -2.257 |
| IL1 | 0.561 | -1.0 |
| Rapamycin | 0.822 | -2.427 |
| Tcell | 0.075 | 0.596 |
| GMCSF | 0.906 | -0.694 |
| IFNab | 0.045 | -2.013 |
| IFNg | 0.43 | -1.505 |
| IFNg_GMCSF1 | -0.487 | -2.017 |
| Rv1432_day32 | 0.963 | 0.731 |
| Rv1565c_day32 | -0.682 | -1.311 |
| secA2_input | 0.848 | -0.377 |
| delta_Rv3594 | -0.846 | -0.234 |
| delta_Rv3717 | 0.467 | 0.766 |
| delta_Rv3811 | -0.464 | -1.084 |
| delta_Rv0954 | -0.783 | -0.596 |
| PonA1 | -0.658 | 0.792 |
| EccD1_KO | -0.516 | -0.72 |
| EspI_KO | -1.144 | -0.941 |
| PE35_KO | -0.487 | -0.998 |
| PPE68_KO | -1.245 | -0.893 |
| glycerol2 | -0.859 | -1.449 |
| lignocerate | -1.679 | -2.954 |
| oleate | -1.16 | -2.884 |
| phosphatidylcholine | -1.931 | -2.578 |
| acetate | -0.6 | -0.785 |
| glucAc | -0.508 | -1.674 |
| Rv0950ko | 0.286 | 1.447 |
| Rv1096ko | 0.0 | 0.072 |
| Rv3684ko | 0.743 | 1.601 |
| delta_otsA_trehalose | 2.083 | 0.147 |