Top 10 genes with highest correlation to Rv3195/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0789c/- | (cc=0.5915) | info on Rv0789c/- |
| Rv2532c/- | (cc=0.5664) | info on Rv2532c/- |
| Rv0886/fprB | (cc=0.5645) | info on Rv0886/fprB |
| Rv3641c/fic | (cc=0.5563) | info on Rv3641c/fic |
| Rv0136/cyp138 | (cc=0.5428) | info on Rv0136/cyp138 |
| Rv2768c/PPE43 | (cc=0.5412) | info on Rv2768c/PPE43 |
| Rv0757/phoP | (cc=0.5387) | info on Rv0757/phoP |
| Rv1289/- | (cc=0.5323) | info on Rv1289/- |
| Rv1541c/lprI | (cc=0.5255) | info on Rv1541c/lprI |
| Rv0570/nrdZ | (cc=0.525) | info on Rv0570/nrdZ |
Correlation of Rv3195/- with Rv2768c/PPE43
Normalized LFCs for Rv3195/-:
(description and provenance of datasets)
| Rv3195/- | Rv2768c/PPE43 | |
| Fe_supp_jason_reseq | 0.068 | -1.089 |
| low_pH_jason_reseq | 0.125 | 0.49 |
| NO_jason_reseq | 0.142 | -0.018 |
| B6_jason_reseq | 0.376 | 0.289 |
| MHCII_jason_reseq | 0.468 | 0.712 |
| Isoniazid02 | -0.016 | 0.288 |
| Rifampicin4 | 0.206 | 0.214 |
| Ethambutol3 | 0.013 | 0.848 |
| Meropenem3 | 0.212 | -0.207 |
| Vancomycin16 | 0.257 | 0.191 |
| Rv2680_day32 | 0.952 | 1.162 |
| H37Rv_KO_MarP | 0.154 | 0.083 |
| hypoxia_3wks | -0.475 | -0.144 |
| hypoxia_6wks | -0.021 | -0.136 |
| glycerol | -0.246 | -0.658 |
| cholesterol | -0.294 | -0.184 |
| AJ | 0.094 | 0.316 |
| Bibs02 | -1.203 | 0.279 |
| Bibs02c | -0.508 | 0.579 |
| BL6 | -0.474 | -0.676 |
| BL6a | -1.076 | -0.044 |
| BXD01 | -0.668 | -0.192 |
| BXD010 | -0.922 | -0.871 |
| BXD011 | -0.433 | -0.389 |
| BXD03 | -0.703 | -0.278 |
| BXD04 | -0.257 | -0.042 |
| BXD05 | -0.39 | -0.53 |
| BXD06 | -0.81 | -0.349 |
| BXD07 | -0.841 | -0.389 |
| BXD08 | -0.672 | -0.355 |
| BXD09 | -0.451 | -0.698 |
| CAST | -0.108 | 0.199 |
| CCcont | -0.354 | -0.427 |
| DS01 | -0.729 | 0.773 |
| DS02 | -0.134 | 0.158 |
| DS04 | 0.41 | 0.908 |
| DS0c | 0.64 | 0.577 |
| GP01 | -0.591 | -0.022 |
| GP02 | -0.622 | -0.789 |
| GP0c | -1.434 | -1.012 |
| NOD | -0.205 | -0.342 |
| NZO | 0.331 | 0.233 |
| PWK | -0.27 | 0.229 |
| H37Rv_KO_CtpC | -0.076 | -0.64 |
| H37Rv_KO_CtpD | -0.65 | 0.009 |
| H37Rv_KO_Rv1272 | -0.247 | -0.167 |
| H37Rv_KO_SugABC | -0.695 | 0.189 |
| H37Rv_KO_MbtN | -0.214 | 0.212 |
| Trans05 | 0.042 | -0.473 |
| macrophage_unactivated | -0.107 | 0.306 |
| IL1 | 0.065 | -0.101 |
| Rapamycin | -0.212 | -0.574 |
| Tcell | 0.0 | 0.316 |
| GMCSF | 0.256 | 0.045 |
| IFNab | -0.172 | -0.051 |
| IFNg | 0.147 | -0.788 |
| IFNg_GMCSF1 | 0.035 | -0.214 |
| Rv1432_day32 | -0.037 | 0.656 |
| Rv1565c_day32 | 0.648 | 0.954 |
| secA2_input | 0.041 | 0.318 |
| delta_Rv3594 | -0.659 | 0.74 |
| delta_Rv3717 | -0.69 | 0.259 |
| delta_Rv3811 | -0.622 | 0.015 |
| delta_Rv0954 | -0.492 | 0.355 |
| PonA1 | 0.347 | 0.575 |
| EccD1_KO | 1.082 | 0.263 |
| EspI_KO | 0.034 | -0.094 |
| PE35_KO | 0.411 | 0.166 |
| PPE68_KO | -0.285 | -0.413 |
| glycerol2 | 0.894 | 0.64 |
| lignocerate | 1.086 | 1.174 |
| oleate | 0.201 | 0.444 |
| phosphatidylcholine | 0.826 | 0.905 |
| acetate | 0.429 | 0.359 |
| glucAc | 1.187 | 0.602 |
| Rv0950ko | 0.392 | 0.109 |
| Rv1096ko | -0.151 | -0.112 |
| Rv3684ko | -0.377 | -0.534 |
| delta_otsA_trehalose | -1.454 | -0.447 |