Top 10 genes with highest correlation to Rv3195/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0789c/- | (cc=0.5915) | info on Rv0789c/- |
| Rv2532c/- | (cc=0.5664) | info on Rv2532c/- |
| Rv0886/fprB | (cc=0.5645) | info on Rv0886/fprB |
| Rv3641c/fic | (cc=0.5563) | info on Rv3641c/fic |
| Rv0136/cyp138 | (cc=0.5428) | info on Rv0136/cyp138 |
| Rv2768c/PPE43 | (cc=0.5412) | info on Rv2768c/PPE43 |
| Rv0757/phoP | (cc=0.5387) | info on Rv0757/phoP |
| Rv1289/- | (cc=0.5323) | info on Rv1289/- |
| Rv1541c/lprI | (cc=0.5255) | info on Rv1541c/lprI |
| Rv0570/nrdZ | (cc=0.525) | info on Rv0570/nrdZ |
Correlation of Rv3195/- with Rv0757/phoP
Normalized LFCs for Rv3195/-:
(description and provenance of datasets)
| Rv3195/- | Rv0757/phoP | |
| Fe_supp_jason_reseq | 0.068 | 3.743 |
| low_pH_jason_reseq | 0.125 | 2.056 |
| NO_jason_reseq | 0.142 | -3.04 |
| B6_jason_reseq | 0.376 | -0.237 |
| MHCII_jason_reseq | 0.468 | -0.839 |
| Isoniazid02 | -0.016 | -2.642 |
| Rifampicin4 | 0.206 | -2.957 |
| Ethambutol3 | 0.013 | 0.242 |
| Meropenem3 | 0.212 | 0.513 |
| Vancomycin16 | 0.257 | -1.345 |
| Rv2680_day32 | 0.952 | 2.066 |
| H37Rv_KO_MarP | 0.154 | 3.807 |
| hypoxia_3wks | -0.475 | -2.628 |
| hypoxia_6wks | -0.021 | -2.76 |
| glycerol | -0.246 | -6.0 |
| cholesterol | -0.294 | -4.916 |
| AJ | 0.094 | -6.0 |
| Bibs02 | -1.203 | -4.225 |
| Bibs02c | -0.508 | -5.058 |
| BL6 | -0.474 | -4.37 |
| BL6a | -1.076 | -5.384 |
| BXD01 | -0.668 | -4.551 |
| BXD010 | -0.922 | -4.347 |
| BXD011 | -0.433 | -3.528 |
| BXD03 | -0.703 | -4.724 |
| BXD04 | -0.257 | -4.321 |
| BXD05 | -0.39 | -4.702 |
| BXD06 | -0.81 | -4.664 |
| BXD07 | -0.841 | -4.838 |
| BXD08 | -0.672 | -4.647 |
| BXD09 | -0.451 | -4.91 |
| CAST | -0.108 | -6.0 |
| CCcont | -0.354 | -0.89 |
| DS01 | -0.729 | -6.0 |
| DS02 | -0.134 | -5.026 |
| DS04 | 0.41 | -5.373 |
| DS0c | 0.64 | -4.737 |
| GP01 | -0.591 | -3.45 |
| GP02 | -0.622 | -2.907 |
| GP0c | -1.434 | -3.904 |
| NOD | -0.205 | -4.535 |
| NZO | 0.331 | -6.0 |
| PWK | -0.27 | -5.89 |
| H37Rv_KO_CtpC | -0.076 | -4.499 |
| H37Rv_KO_CtpD | -0.65 | -3.111 |
| H37Rv_KO_Rv1272 | -0.247 | -4.54 |
| H37Rv_KO_SugABC | -0.695 | -3.362 |
| H37Rv_KO_MbtN | -0.214 | -2.454 |
| Trans05 | 0.042 | -4.206 |
| macrophage_unactivated | -0.107 | -1.96 |
| IL1 | 0.065 | -1.842 |
| Rapamycin | -0.212 | -1.274 |
| Tcell | 0.0 | -1.678 |
| GMCSF | 0.256 | -2.64 |
| IFNab | -0.172 | -3.023 |
| IFNg | 0.147 | -2.673 |
| IFNg_GMCSF1 | 0.035 | -3.142 |
| Rv1432_day32 | -0.037 | 0.458 |
| Rv1565c_day32 | 0.648 | 1.579 |
| secA2_input | 0.041 | -0.238 |
| delta_Rv3594 | -0.659 | -6.0 |
| delta_Rv3717 | -0.69 | -5.163 |
| delta_Rv3811 | -0.622 | -6.0 |
| delta_Rv0954 | -0.492 | -1.579 |
| PonA1 | 0.347 | -0.548 |
| EccD1_KO | 1.082 | -1.174 |
| EspI_KO | 0.034 | -0.416 |
| PE35_KO | 0.411 | 2.173 |
| PPE68_KO | -0.285 | 1.507 |
| glycerol2 | 0.894 | 0.193 |
| lignocerate | 1.086 | 0.0 |
| oleate | 0.201 | 2.935 |
| phosphatidylcholine | 0.826 | 6.0 |
| acetate | 0.429 | 0.0 |
| glucAc | 1.187 | 0.272 |
| Rv0950ko | 0.392 | 0.299 |
| Rv1096ko | -0.151 | 0.0 |
| Rv3684ko | -0.377 | 0.164 |
| delta_otsA_trehalose | -1.454 | -2.245 |