Top 10 genes with highest correlation to Rv3195/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0789c/- | (cc=0.5915) | info on Rv0789c/- |
| Rv2532c/- | (cc=0.5664) | info on Rv2532c/- |
| Rv0886/fprB | (cc=0.5645) | info on Rv0886/fprB |
| Rv3641c/fic | (cc=0.5563) | info on Rv3641c/fic |
| Rv0136/cyp138 | (cc=0.5428) | info on Rv0136/cyp138 |
| Rv2768c/PPE43 | (cc=0.5412) | info on Rv2768c/PPE43 |
| Rv0757/phoP | (cc=0.5387) | info on Rv0757/phoP |
| Rv1289/- | (cc=0.5323) | info on Rv1289/- |
| Rv1541c/lprI | (cc=0.5255) | info on Rv1541c/lprI |
| Rv0570/nrdZ | (cc=0.525) | info on Rv0570/nrdZ |
Correlation of Rv3195/- with Rv0570/nrdZ
Normalized LFCs for Rv3195/-:
(description and provenance of datasets)
| Rv3195/- | Rv0570/nrdZ | |
| Fe_supp_jason_reseq | 0.068 | 0.022 |
| low_pH_jason_reseq | 0.125 | 0.694 |
| NO_jason_reseq | 0.142 | 0.599 |
| B6_jason_reseq | 0.376 | 0.881 |
| MHCII_jason_reseq | 0.468 | 1.017 |
| Isoniazid02 | -0.016 | -0.597 |
| Rifampicin4 | 0.206 | 0.217 |
| Ethambutol3 | 0.013 | -0.499 |
| Meropenem3 | 0.212 | -1.562 |
| Vancomycin16 | 0.257 | -0.756 |
| Rv2680_day32 | 0.952 | 0.579 |
| H37Rv_KO_MarP | 0.154 | 0.155 |
| hypoxia_3wks | -0.475 | -0.778 |
| hypoxia_6wks | -0.021 | 0.0 |
| glycerol | -0.246 | -0.424 |
| cholesterol | -0.294 | -0.813 |
| AJ | 0.094 | -0.565 |
| Bibs02 | -1.203 | 0.441 |
| Bibs02c | -0.508 | -0.321 |
| BL6 | -0.474 | -0.079 |
| BL6a | -1.076 | -0.874 |
| BXD01 | -0.668 | -0.615 |
| BXD010 | -0.922 | -1.262 |
| BXD011 | -0.433 | -0.994 |
| BXD03 | -0.703 | -0.364 |
| BXD04 | -0.257 | -0.666 |
| BXD05 | -0.39 | -0.027 |
| BXD06 | -0.81 | -0.616 |
| BXD07 | -0.841 | -0.582 |
| BXD08 | -0.672 | -0.533 |
| BXD09 | -0.451 | -0.741 |
| CAST | -0.108 | -0.112 |
| CCcont | -0.354 | -0.612 |
| DS01 | -0.729 | 0.048 |
| DS02 | -0.134 | 0.17 |
| DS04 | 0.41 | 0.58 |
| DS0c | 0.64 | 0.264 |
| GP01 | -0.591 | -0.543 |
| GP02 | -0.622 | -0.239 |
| GP0c | -1.434 | -0.508 |
| NOD | -0.205 | -0.666 |
| NZO | 0.331 | -0.608 |
| PWK | -0.27 | 0.117 |
| H37Rv_KO_CtpC | -0.076 | -0.249 |
| H37Rv_KO_CtpD | -0.65 | -0.572 |
| H37Rv_KO_Rv1272 | -0.247 | -1.294 |
| H37Rv_KO_SugABC | -0.695 | -0.942 |
| H37Rv_KO_MbtN | -0.214 | 0.18 |
| Trans05 | 0.042 | 0.35 |
| macrophage_unactivated | -0.107 | -0.789 |
| IL1 | 0.065 | -0.567 |
| Rapamycin | -0.212 | -0.411 |
| Tcell | 0.0 | -0.622 |
| GMCSF | 0.256 | -0.504 |
| IFNab | -0.172 | -0.157 |
| IFNg | 0.147 | -0.104 |
| IFNg_GMCSF1 | 0.035 | 0.531 |
| Rv1432_day32 | -0.037 | -0.218 |
| Rv1565c_day32 | 0.648 | 0.785 |
| secA2_input | 0.041 | 0.432 |
| delta_Rv3594 | -0.659 | 0.581 |
| delta_Rv3717 | -0.69 | 0.38 |
| delta_Rv3811 | -0.622 | 0.402 |
| delta_Rv0954 | -0.492 | 0.194 |
| PonA1 | 0.347 | -0.046 |
| EccD1_KO | 1.082 | 0.553 |
| EspI_KO | 0.034 | 0.051 |
| PE35_KO | 0.411 | 0.58 |
| PPE68_KO | -0.285 | 0.589 |
| glycerol2 | 0.894 | 1.04 |
| lignocerate | 1.086 | 1.727 |
| oleate | 0.201 | 0.245 |
| phosphatidylcholine | 0.826 | 1.147 |
| acetate | 0.429 | 1.072 |
| glucAc | 1.187 | 1.2 |
| Rv0950ko | 0.392 | 0.41 |
| Rv1096ko | -0.151 | 0.648 |
| Rv3684ko | -0.377 | 0.55 |
| delta_otsA_trehalose | -1.454 | 0.023 |