Top 10 genes with highest correlation to Rv3169/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3652/PE_PGRS60 | (cc=0.4912) | info on Rv3652/PE_PGRS60 |
| Rv3091/- | (cc=0.4839) | info on Rv3091/- |
| Rv1046c/- | (cc=0.4329) | info on Rv1046c/- |
| Rv1967/mce3B | (cc=0.4307) | info on Rv1967/mce3B |
| Rv1936/- | (cc=0.4055) | info on Rv1936/- |
| Rv0569/- | (cc=0.405) | info on Rv0569/- |
| Rv2578c/- | (cc=0.4045) | info on Rv2578c/- |
| Rv2701c/suhB | (cc=0.3862) | info on Rv2701c/suhB |
| Rv0753c/mmsA | (cc=0.3787) | info on Rv0753c/mmsA |
| Rv0613c/- | (cc=0.3731) | info on Rv0613c/- |
Correlation of Rv3169/- with Rv3652/PE_PGRS60
Normalized LFCs for Rv3169/-:
(description and provenance of datasets)
| Rv3169/- | Rv3652/PE_PGRS60 | |
| Fe_supp_jason_reseq | -1.097 | -0.27 |
| low_pH_jason_reseq | 0.299 | 1.079 |
| NO_jason_reseq | 0.055 | 0.186 |
| B6_jason_reseq | -0.525 | 0.641 |
| MHCII_jason_reseq | -0.2 | 0.67 |
| Isoniazid02 | 0.122 | 0.33 |
| Rifampicin4 | -0.574 | -0.217 |
| Ethambutol3 | -0.347 | 0.169 |
| Meropenem3 | -0.122 | 0.153 |
| Vancomycin16 | 1.711 | 1.101 |
| Rv2680_day32 | -0.208 | 2.801 |
| H37Rv_KO_MarP | -0.66 | 0.104 |
| hypoxia_3wks | 0.407 | 0.618 |
| hypoxia_6wks | -0.434 | 0.084 |
| glycerol | 0.664 | 0.62 |
| cholesterol | 1.087 | 0.779 |
| AJ | 0.274 | -0.111 |
| Bibs02 | -0.682 | 0.699 |
| Bibs02c | -0.112 | -0.573 |
| BL6 | -1.073 | -1.002 |
| BL6a | -0.595 | -0.512 |
| BXD01 | -0.79 | -0.249 |
| BXD010 | -0.536 | -0.837 |
| BXD011 | -0.17 | -0.305 |
| BXD03 | 0.082 | -1.399 |
| BXD04 | 0.515 | -0.409 |
| BXD05 | -0.331 | -0.534 |
| BXD06 | -0.401 | -0.522 |
| BXD07 | -0.397 | -0.716 |
| BXD08 | -0.418 | -0.091 |
| BXD09 | 0.14 | -0.683 |
| CAST | 0.252 | 0.155 |
| CCcont | -0.746 | -1.008 |
| DS01 | -0.101 | 0.712 |
| DS02 | -0.507 | -0.26 |
| DS04 | 1.301 | 0.557 |
| DS0c | -0.563 | -0.508 |
| GP01 | 0.694 | -0.386 |
| GP02 | 0.944 | 0.445 |
| GP0c | 0.013 | -0.907 |
| NOD | -0.438 | -0.462 |
| NZO | -0.315 | 0.262 |
| PWK | -0.193 | -0.618 |
| H37Rv_KO_CtpC | 0.034 | -2.385 |
| H37Rv_KO_CtpD | -0.491 | -1.86 |
| H37Rv_KO_Rv1272 | 0.232 | -0.668 |
| H37Rv_KO_SugABC | -1.775 | -1.701 |
| H37Rv_KO_MbtN | -1.131 | -0.861 |
| Trans05 | -1.357 | -1.511 |
| macrophage_unactivated | 0.0 | 0.114 |
| IL1 | 0.0 | 1.21 |
| Rapamycin | 0.132 | -0.377 |
| Tcell | -0.886 | -0.222 |
| GMCSF | 0.539 | 0.61 |
| IFNab | 0.172 | 1.233 |
| IFNg | 0.152 | -0.139 |
| IFNg_GMCSF1 | 0.437 | 0.138 |
| Rv1432_day32 | -0.043 | 0.343 |
| Rv1565c_day32 | 0.466 | 0.722 |
| secA2_input | 0.131 | -0.258 |
| delta_Rv3594 | 0.22 | -0.376 |
| delta_Rv3717 | 0.736 | 0.789 |
| delta_Rv3811 | -0.271 | -0.291 |
| delta_Rv0954 | -0.637 | 0.247 |
| PonA1 | -0.394 | -0.455 |
| EccD1_KO | 0.257 | 0.638 |
| EspI_KO | 1.115 | 0.428 |
| PE35_KO | 0.528 | 1.152 |
| PPE68_KO | 0.71 | 0.729 |
| glycerol2 | 0.193 | 0.42 |
| lignocerate | 0.0 | -0.161 |
| oleate | 0.373 | 0.961 |
| phosphatidylcholine | 0.34 | 0.193 |
| acetate | -0.298 | -0.091 |
| glucAc | 0.313 | -0.6 |
| Rv0950ko | 0.561 | -0.226 |
| Rv1096ko | 0.691 | 0.422 |
| Rv3684ko | 0.888 | 0.177 |
| delta_otsA_trehalose | 0.858 | 1.871 |