Top 10 genes with highest correlation to Rv3143/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3152/nuoH | (cc=0.74) | info on Rv3152/nuoH |
| Rv3151/nuoG | (cc=0.7101) | info on Rv3151/nuoG |
| Rv3150/nuoF | (cc=0.6843) | info on Rv3150/nuoF |
| Rv3156/nuoL | (cc=0.661) | info on Rv3156/nuoL |
| Rv3158/nuoN | (cc=0.6573) | info on Rv3158/nuoN |
| Rv2548/vapC19 | (cc=0.6341) | info on Rv2548/vapC19 |
| Rv3145/nuoA | (cc=0.6264) | info on Rv3145/nuoA |
| Rv3148/nuoD | (cc=0.6216) | info on Rv3148/nuoD |
| Rv3232c/ppk2 | (cc=0.6119) | info on Rv3232c/ppk2 |
| Rv3153/nuoI | (cc=0.6094) | info on Rv3153/nuoI |
Correlation of Rv3143/- with Rv3156/nuoL
Normalized LFCs for Rv3143/-:
(description and provenance of datasets)
| Rv3143/- | Rv3156/nuoL | |
| Fe_supp_jason_reseq | -1.877 | -0.41 |
| low_pH_jason_reseq | -1.143 | -1.186 |
| NO_jason_reseq | -1.208 | 0.0 |
| B6_jason_reseq | -4.188 | -0.787 |
| MHCII_jason_reseq | -1.39 | -0.544 |
| Isoniazid02 | 0.266 | -1.825 |
| Rifampicin4 | -0.295 | 1.021 |
| Ethambutol3 | -0.298 | -0.621 |
| Meropenem3 | 0.313 | -0.673 |
| Vancomycin16 | 0.117 | -0.223 |
| Rv2680_day32 | -0.985 | -0.524 |
| H37Rv_KO_MarP | -0.346 | -0.387 |
| hypoxia_3wks | 0.471 | 1.3 |
| hypoxia_6wks | -0.793 | 0.205 |
| glycerol | -2.776 | -0.234 |
| cholesterol | -0.689 | -0.898 |
| AJ | 0.116 | -0.269 |
| Bibs02 | 0.177 | 0.873 |
| Bibs02c | -0.285 | 1.105 |
| BL6 | 1.687 | 1.47 |
| BL6a | 1.581 | 1.808 |
| BXD01 | 1.228 | 1.047 |
| BXD010 | 3.555 | 1.308 |
| BXD011 | 2.162 | 1.707 |
| BXD03 | 1.924 | 1.502 |
| BXD04 | 1.727 | 0.693 |
| BXD05 | 3.618 | 1.772 |
| BXD06 | 1.509 | 1.533 |
| BXD07 | 2.527 | 1.371 |
| BXD08 | 1.527 | 1.052 |
| BXD09 | 2.053 | 1.346 |
| CAST | -0.918 | 0.123 |
| CCcont | 1.801 | 0.861 |
| DS01 | 0.725 | 1.169 |
| DS02 | 2.759 | 1.453 |
| DS04 | 2.292 | 1.703 |
| DS0c | 1.045 | 1.285 |
| GP01 | 1.656 | 1.605 |
| GP02 | 2.771 | 1.171 |
| GP0c | 2.04 | 1.551 |
| NOD | -2.696 | 0.867 |
| NZO | -0.272 | -0.055 |
| PWK | -2.062 | -0.29 |
| H37Rv_KO_CtpC | 0.588 | 1.177 |
| H37Rv_KO_CtpD | 1.365 | 2.074 |
| H37Rv_KO_Rv1272 | 0.909 | 1.498 |
| H37Rv_KO_SugABC | 3.633 | 2.384 |
| H37Rv_KO_MbtN | -0.373 | 0.829 |
| Trans05 | 2.717 | 1.208 |
| macrophage_unactivated | 0.65 | -0.316 |
| IL1 | -0.712 | 0.0 |
| Rapamycin | -0.951 | -0.15 |
| Tcell | 0.111 | -0.267 |
| GMCSF | 0.296 | -0.309 |
| IFNab | 0.339 | 0.097 |
| IFNg | 0.091 | 0.126 |
| IFNg_GMCSF1 | -0.503 | -0.314 |
| Rv1432_day32 | 1.781 | 0.134 |
| Rv1565c_day32 | 0.0 | -0.038 |
| secA2_input | -1.623 | -0.565 |
| delta_Rv3594 | 0.653 | 0.087 |
| delta_Rv3717 | 0.229 | 0.269 |
| delta_Rv3811 | -1.331 | -0.149 |
| delta_Rv0954 | 1.12 | 0.211 |
| PonA1 | -0.34 | 0.044 |
| EccD1_KO | 0.806 | -1.02 |
| EspI_KO | -0.428 | -0.884 |
| PE35_KO | 0.738 | -0.33 |
| PPE68_KO | 0.461 | -0.118 |
| glycerol2 | 1.648 | 1.914 |
| lignocerate | -0.207 | -0.852 |
| oleate | 0.645 | 2.375 |
| phosphatidylcholine | -0.324 | -0.744 |
| acetate | 1.662 | 0.572 |
| glucAc | 0.253 | 0.163 |
| Rv0950ko | -0.962 | 0.422 |
| Rv1096ko | 0.932 | 0.636 |
| Rv3684ko | 0.21 | 0.537 |
| delta_otsA_trehalose | 1.437 | 1.21 |