Top 10 genes with highest correlation to Rv3135/PPE50:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3136/PPE51 | (cc=0.8746) | info on Rv3136/PPE51 |
| Rv3136A/- | (cc=0.6146) | info on Rv3136A/- |
| Rv0270/fadD2 | (cc=0.4955) | info on Rv0270/fadD2 |
| Rv1626/- | (cc=0.4781) | info on Rv1626/- |
| Rv2081c/- | (cc=0.4616) | info on Rv2081c/- |
| Rv0221/- | (cc=0.4602) | info on Rv0221/- |
| Rv1344/mbtL | (cc=0.4572) | info on Rv1344/mbtL |
| Rv1374c/- | (cc=0.4549) | info on Rv1374c/- |
| Rv3395A/- | (cc=0.4461) | info on Rv3395A/- |
| Rv2627c/- | (cc=0.4455) | info on Rv2627c/- |
Correlation of Rv3135/PPE50 with Rv0221/-
Normalized LFCs for Rv3135/PPE50:
(description and provenance of datasets)
| Rv3135/PPE50 | Rv0221/- | |
| Fe_supp_jason_reseq | 0.688 | 1.018 |
| low_pH_jason_reseq | 0.174 | 0.264 |
| NO_jason_reseq | 2.801 | -0.252 |
| B6_jason_reseq | 2.183 | 1.237 |
| MHCII_jason_reseq | 1.116 | 1.549 |
| Isoniazid02 | 3.336 | 0.627 |
| Rifampicin4 | -2.285 | 0.07 |
| Ethambutol3 | 1.802 | 0.685 |
| Meropenem3 | 3.717 | 0.208 |
| Vancomycin16 | -2.995 | 0.239 |
| Rv2680_day32 | 2.964 | 0.687 |
| H37Rv_KO_MarP | 1.094 | 0.524 |
| hypoxia_3wks | 0.562 | 0.195 |
| hypoxia_6wks | -1.061 | 0.714 |
| glycerol | -4.007 | 0.184 |
| cholesterol | -5.184 | -0.282 |
| AJ | -2.508 | -0.198 |
| Bibs02 | -1.37 | 0.025 |
| Bibs02c | -1.193 | 0.243 |
| BL6 | -3.041 | 0.323 |
| BL6a | -1.129 | 0.382 |
| BXD01 | -1.012 | -0.121 |
| BXD010 | -0.585 | 0.372 |
| BXD011 | -0.534 | 0.435 |
| BXD03 | -2.318 | 0.261 |
| BXD04 | 0.107 | 0.008 |
| BXD05 | -0.724 | 0.205 |
| BXD06 | -0.534 | -0.066 |
| BXD07 | -1.596 | 0.065 |
| BXD08 | -0.665 | 0.33 |
| BXD09 | -1.041 | 0.341 |
| CAST | -1.864 | 0.295 |
| CCcont | -1.868 | 0.173 |
| DS01 | -2.247 | 0.4 |
| DS02 | -0.487 | -0.17 |
| DS04 | -2.562 | 0.963 |
| DS0c | -1.138 | 0.143 |
| GP01 | -4.382 | -0.014 |
| GP02 | -3.217 | -0.204 |
| GP0c | -5.348 | -0.848 |
| NOD | -1.914 | 0.42 |
| NZO | -0.813 | 0.144 |
| PWK | -1.82 | 0.539 |
| H37Rv_KO_CtpC | -0.453 | 0.394 |
| H37Rv_KO_CtpD | 0.28 | 0.193 |
| H37Rv_KO_Rv1272 | -2.059 | 0.129 |
| H37Rv_KO_SugABC | -1.424 | -0.504 |
| H37Rv_KO_MbtN | -2.371 | -0.057 |
| Trans05 | -1.383 | -0.093 |
| macrophage_unactivated | -2.209 | -0.23 |
| IL1 | -0.715 | 0.273 |
| Rapamycin | -1.163 | 0.325 |
| Tcell | 1.137 | -0.026 |
| GMCSF | -0.853 | 0.061 |
| IFNab | -1.769 | -0.145 |
| IFNg | 0.623 | 0.382 |
| IFNg_GMCSF1 | -0.217 | 0.072 |
| Rv1432_day32 | 2.57 | 0.828 |
| Rv1565c_day32 | -2.088 | -0.344 |
| secA2_input | -1.736 | -0.207 |
| delta_Rv3594 | -1.065 | -0.054 |
| delta_Rv3717 | -1.501 | -0.537 |
| delta_Rv3811 | -1.205 | -0.522 |
| delta_Rv0954 | -1.047 | 0.044 |
| PonA1 | -1.091 | 0.512 |
| EccD1_KO | -2.937 | -1.043 |
| EspI_KO | -2.033 | -0.841 |
| PE35_KO | -1.61 | -0.668 |
| PPE68_KO | -1.465 | -0.63 |
| glycerol2 | 1.188 | 0.443 |
| lignocerate | -1.594 | 0.75 |
| oleate | 1.752 | 0.339 |
| phosphatidylcholine | 0.045 | 0.335 |
| acetate | -0.72 | 0.151 |
| glucAc | -1.299 | 0.282 |
| Rv0950ko | 0.024 | 0.103 |
| Rv1096ko | -1.342 | 0.621 |
| Rv3684ko | 0.671 | 0.075 |
| delta_otsA_trehalose | -2.409 | -0.155 |