Top 10 genes with highest correlation to Rv3096/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3005c/- | (cc=0.5591) | info on Rv3005c/- |
| Rv0994/moeA1 | (cc=0.5581) | info on Rv0994/moeA1 |
| Rv1838c/vapC13 | (cc=0.5437) | info on Rv1838c/vapC13 |
| Rv0789c/- | (cc=0.5281) | info on Rv0789c/- |
| Rv1860/apa | (cc=0.5168) | info on Rv1860/apa |
| Rv3536c/hsaE | (cc=0.5094) | info on Rv3536c/hsaE |
| Rv3717/- | (cc=0.5064) | info on Rv3717/- |
| Rv0963c/- | (cc=0.5013) | info on Rv0963c/- |
| Rv0436c/pssA | (cc=0.4932) | info on Rv0436c/pssA |
| Rv0995/rimJ | (cc=0.4874) | info on Rv0995/rimJ |
Correlation of Rv3096/- with Rv0436c/pssA
Normalized LFCs for Rv3096/-:
(description and provenance of datasets)
| Rv3096/- | Rv0436c/pssA | |
| Fe_supp_jason_reseq | 0.136 | 1.339 |
| low_pH_jason_reseq | -0.211 | 0.0 |
| NO_jason_reseq | -0.677 | 0.0 |
| B6_jason_reseq | -0.203 | 0.0 |
| MHCII_jason_reseq | -0.252 | 0.135 |
| Isoniazid02 | -0.29 | 0.522 |
| Rifampicin4 | -1.332 | -3.254 |
| Ethambutol3 | -0.247 | -0.935 |
| Meropenem3 | 0.0 | -2.184 |
| Vancomycin16 | -1.082 | -5.144 |
| Rv2680_day32 | -0.655 | -1.066 |
| H37Rv_KO_MarP | -0.658 | -1.954 |
| hypoxia_3wks | -0.794 | -1.87 |
| hypoxia_6wks | 0.129 | -1.771 |
| glycerol | 0.089 | -0.41 |
| cholesterol | 0.173 | 0.39 |
| AJ | -0.151 | -1.055 |
| Bibs02 | 0.955 | 1.433 |
| Bibs02c | 0.267 | 1.091 |
| BL6 | -0.275 | -0.694 |
| BL6a | 0.194 | -0.26 |
| BXD01 | -0.671 | -0.593 |
| BXD010 | -0.366 | -0.711 |
| BXD011 | -0.491 | -0.464 |
| BXD03 | -0.359 | -0.75 |
| BXD04 | 0.047 | -0.686 |
| BXD05 | -0.53 | -0.49 |
| BXD06 | -0.655 | -0.741 |
| BXD07 | -0.235 | -0.768 |
| BXD08 | -0.202 | -0.605 |
| BXD09 | -0.309 | -0.639 |
| CAST | -0.39 | -1.048 |
| CCcont | -0.222 | 2.475 |
| DS01 | 0.275 | 1.049 |
| DS02 | 0.019 | -0.61 |
| DS04 | 0.589 | 1.521 |
| DS0c | 0.357 | -0.608 |
| GP01 | -0.189 | -0.548 |
| GP02 | -0.492 | -0.462 |
| GP0c | -0.326 | -0.721 |
| NOD | 0.62 | -0.456 |
| NZO | 0.184 | -0.405 |
| PWK | -0.462 | -0.55 |
| H37Rv_KO_CtpC | 0.414 | 0.785 |
| H37Rv_KO_CtpD | 0.494 | 0.0 |
| H37Rv_KO_Rv1272 | 0.261 | -0.089 |
| H37Rv_KO_SugABC | 1.089 | -0.361 |
| H37Rv_KO_MbtN | -0.411 | -0.135 |
| Trans05 | 0.759 | -0.476 |
| macrophage_unactivated | 0.158 | 1.31 |
| IL1 | 0.012 | 0.78 |
| Rapamycin | -0.298 | 1.274 |
| Tcell | -0.241 | -1.049 |
| GMCSF | 0.475 | 0.9 |
| IFNab | -0.012 | 1.031 |
| IFNg | -0.433 | 1.478 |
| IFNg_GMCSF1 | 0.145 | 1.304 |
| Rv1432_day32 | -0.116 | -0.884 |
| Rv1565c_day32 | -0.103 | 0.992 |
| secA2_input | 0.2 | -0.526 |
| delta_Rv3594 | -0.015 | 0.34 |
| delta_Rv3717 | -0.422 | -1.518 |
| delta_Rv3811 | -0.097 | 0.451 |
| delta_Rv0954 | 0.483 | 1.096 |
| PonA1 | 0.093 | 0.748 |
| EccD1_KO | 0.276 | 0.0 |
| EspI_KO | 0.616 | 0.131 |
| PE35_KO | 0.233 | 1.257 |
| PPE68_KO | 0.214 | 0.95 |
| glycerol2 | 0.513 | 0.193 |
| lignocerate | 1.287 | 0.0 |
| oleate | 0.234 | 0.0 |
| phosphatidylcholine | 0.654 | 0.0 |
| acetate | 0.494 | 0.229 |
| glucAc | 0.876 | 0.143 |
| Rv0950ko | 0.25 | -0.187 |
| Rv1096ko | 0.35 | 0.223 |
| Rv3684ko | 0.259 | 0.0 |
| delta_otsA_trehalose | -0.241 | 0.184 |