Top 10 genes with highest correlation to Rv3066/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0113/gmhA | (cc=0.4169) | info on Rv0113/gmhA |
| Rv0243/fadA2 | (cc=0.4069) | info on Rv0243/fadA2 |
| Rv3638/- | (cc=0.4034) | info on Rv3638/- |
| Rv2765/- | (cc=0.4021) | info on Rv2765/- |
| Rv0659c/mazF2 | (cc=0.4014) | info on Rv0659c/mazF2 |
| Rv0233/nrdB | (cc=0.4013) | info on Rv0233/nrdB |
| Rv1349/irtB | (cc=0.3909) | info on Rv1349/irtB |
| Rv1881c/lppE | (cc=0.3874) | info on Rv1881c/lppE |
| Rv3328c/sigJ | (cc=0.3849) | info on Rv3328c/sigJ |
| Rv0307c/- | (cc=0.3847) | info on Rv0307c/- |
Correlation of Rv3066/- with Rv3638/-
Normalized LFCs for Rv3066/-:
(description and provenance of datasets)
| Rv3066/- | Rv3638/- | |
| Fe_supp_jason_reseq | 3.647 | 0.081 |
| low_pH_jason_reseq | 0.371 | -0.144 |
| NO_jason_reseq | -2.625 | -0.139 |
| B6_jason_reseq | 0.736 | 0.405 |
| MHCII_jason_reseq | 2.556 | 0.936 |
| Isoniazid02 | -0.626 | -0.124 |
| Rifampicin4 | 1.01 | -0.585 |
| Ethambutol3 | -0.488 | -0.28 |
| Meropenem3 | -0.137 | -0.087 |
| Vancomycin16 | 0.438 | -0.096 |
| Rv2680_day32 | 1.042 | 1.23 |
| H37Rv_KO_MarP | -0.206 | 0.8 |
| hypoxia_3wks | 2.46 | -0.04 |
| hypoxia_6wks | -0.34 | 0.297 |
| glycerol | -1.954 | -3.169 |
| cholesterol | -2.77 | -1.042 |
| AJ | 1.857 | 0.037 |
| Bibs02 | 0.105 | 0.115 |
| Bibs02c | 0.179 | 0.045 |
| BL6 | -0.6 | -1.463 |
| BL6a | -0.142 | -0.251 |
| BXD01 | -0.625 | -0.507 |
| BXD010 | -0.36 | -1.283 |
| BXD011 | -0.948 | -0.76 |
| BXD03 | -1.062 | -0.637 |
| BXD04 | -1.024 | 0.181 |
| BXD05 | -0.378 | -0.669 |
| BXD06 | -0.941 | -0.399 |
| BXD07 | -0.407 | -0.507 |
| BXD08 | -0.013 | -0.72 |
| BXD09 | -0.548 | -0.514 |
| CAST | -0.045 | -0.377 |
| CCcont | 0.511 | -1.698 |
| DS01 | 2.038 | 0.243 |
| DS02 | 1.82 | 0.339 |
| DS04 | 0.922 | 0.55 |
| DS0c | 1.416 | 0.192 |
| GP01 | 0.084 | 0.797 |
| GP02 | 0.539 | -0.644 |
| GP0c | -0.163 | 0.062 |
| NOD | 0.291 | 0.153 |
| NZO | 0.095 | 0.374 |
| PWK | -0.29 | -0.121 |
| H37Rv_KO_CtpC | 0.167 | -0.632 |
| H37Rv_KO_CtpD | 0.73 | 0.04 |
| H37Rv_KO_Rv1272 | -0.471 | -0.187 |
| H37Rv_KO_SugABC | 0.171 | 0.418 |
| H37Rv_KO_MbtN | -0.788 | 0.044 |
| Trans05 | 0.062 | -0.335 |
| macrophage_unactivated | 0.799 | -1.297 |
| IL1 | -1.261 | -1.219 |
| Rapamycin | -0.826 | -1.016 |
| Tcell | 0.0 | -1.131 |
| GMCSF | 0.198 | -1.127 |
| IFNab | 0.227 | -1.001 |
| IFNg | -0.126 | -0.804 |
| IFNg_GMCSF1 | -0.789 | -0.446 |
| Rv1432_day32 | 0.48 | -0.789 |
| Rv1565c_day32 | 0.649 | 1.17 |
| secA2_input | -1.414 | -0.778 |
| delta_Rv3594 | 0.216 | -0.014 |
| delta_Rv3717 | -0.731 | -0.648 |
| delta_Rv3811 | -1.109 | -0.581 |
| delta_Rv0954 | -0.057 | 0.35 |
| PonA1 | -0.01 | 0.178 |
| EccD1_KO | -0.622 | -0.362 |
| EspI_KO | -0.054 | -0.371 |
| PE35_KO | 0.487 | 0.076 |
| PPE68_KO | -0.09 | 0.432 |
| glycerol2 | 0.0 | 0.015 |
| lignocerate | -0.591 | -0.627 |
| oleate | -0.493 | 0.092 |
| phosphatidylcholine | -0.487 | 0.207 |
| acetate | -0.579 | -0.559 |
| glucAc | 0.375 | -0.881 |
| Rv0950ko | -0.558 | -0.054 |
| Rv1096ko | -0.093 | 0.443 |
| Rv3684ko | -0.684 | -0.308 |
| delta_otsA_trehalose | -0.785 | 0.021 |