Top 10 genes with highest correlation to Rv3066/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0113/gmhA | (cc=0.4169) | info on Rv0113/gmhA |
| Rv0243/fadA2 | (cc=0.4069) | info on Rv0243/fadA2 |
| Rv3638/- | (cc=0.4034) | info on Rv3638/- |
| Rv2765/- | (cc=0.4021) | info on Rv2765/- |
| Rv0659c/mazF2 | (cc=0.4014) | info on Rv0659c/mazF2 |
| Rv0233/nrdB | (cc=0.4013) | info on Rv0233/nrdB |
| Rv1349/irtB | (cc=0.3909) | info on Rv1349/irtB |
| Rv1881c/lppE | (cc=0.3874) | info on Rv1881c/lppE |
| Rv3328c/sigJ | (cc=0.3849) | info on Rv3328c/sigJ |
| Rv0307c/- | (cc=0.3847) | info on Rv0307c/- |
Correlation of Rv3066/- with Rv0233/nrdB
Normalized LFCs for Rv3066/-:
(description and provenance of datasets)
| Rv3066/- | Rv0233/nrdB | |
| Fe_supp_jason_reseq | 3.647 | 0.2 |
| low_pH_jason_reseq | 0.371 | -0.095 |
| NO_jason_reseq | -2.625 | -0.131 |
| B6_jason_reseq | 0.736 | 0.854 |
| MHCII_jason_reseq | 2.556 | 1.421 |
| Isoniazid02 | -0.626 | 0.322 |
| Rifampicin4 | 1.01 | -0.192 |
| Ethambutol3 | -0.488 | 0.154 |
| Meropenem3 | -0.137 | 0.291 |
| Vancomycin16 | 0.438 | -0.443 |
| Rv2680_day32 | 1.042 | 0.614 |
| H37Rv_KO_MarP | -0.206 | 0.167 |
| hypoxia_3wks | 2.46 | -0.159 |
| hypoxia_6wks | -0.34 | 0.192 |
| glycerol | -1.954 | -0.973 |
| cholesterol | -2.77 | -0.39 |
| AJ | 1.857 | 0.316 |
| Bibs02 | 0.105 | 0.891 |
| Bibs02c | 0.179 | 0.543 |
| BL6 | -0.6 | -1.416 |
| BL6a | -0.142 | -0.575 |
| BXD01 | -0.625 | -0.696 |
| BXD010 | -0.36 | -0.537 |
| BXD011 | -0.948 | -0.693 |
| BXD03 | -1.062 | -1.509 |
| BXD04 | -1.024 | -0.539 |
| BXD05 | -0.378 | -0.41 |
| BXD06 | -0.941 | -0.887 |
| BXD07 | -0.407 | -1.157 |
| BXD08 | -0.013 | -0.354 |
| BXD09 | -0.548 | -0.919 |
| CAST | -0.045 | -0.038 |
| CCcont | 0.511 | -1.564 |
| DS01 | 2.038 | 1.025 |
| DS02 | 1.82 | 0.748 |
| DS04 | 0.922 | 0.933 |
| DS0c | 1.416 | 0.548 |
| GP01 | 0.084 | -0.911 |
| GP02 | 0.539 | -0.359 |
| GP0c | -0.163 | -0.382 |
| NOD | 0.291 | 0.605 |
| NZO | 0.095 | 0.12 |
| PWK | -0.29 | -0.242 |
| H37Rv_KO_CtpC | 0.167 | -1.19 |
| H37Rv_KO_CtpD | 0.73 | -0.803 |
| H37Rv_KO_Rv1272 | -0.471 | -0.626 |
| H37Rv_KO_SugABC | 0.171 | -0.316 |
| H37Rv_KO_MbtN | -0.788 | -0.755 |
| Trans05 | 0.062 | -0.13 |
| macrophage_unactivated | 0.799 | -1.083 |
| IL1 | -1.261 | -0.193 |
| Rapamycin | -0.826 | -0.786 |
| Tcell | 0.0 | -0.046 |
| GMCSF | 0.198 | 0.459 |
| IFNab | 0.227 | -0.478 |
| IFNg | -0.126 | 0.38 |
| IFNg_GMCSF1 | -0.789 | -0.396 |
| Rv1432_day32 | 0.48 | 0.042 |
| Rv1565c_day32 | 0.649 | 0.963 |
| secA2_input | -1.414 | 0.106 |
| delta_Rv3594 | 0.216 | -0.399 |
| delta_Rv3717 | -0.731 | -0.766 |
| delta_Rv3811 | -1.109 | -0.589 |
| delta_Rv0954 | -0.057 | -0.252 |
| PonA1 | -0.01 | -0.066 |
| EccD1_KO | -0.622 | -0.286 |
| EspI_KO | -0.054 | -0.368 |
| PE35_KO | 0.487 | -1.041 |
| PPE68_KO | -0.09 | -0.483 |
| glycerol2 | 0.0 | -0.911 |
| lignocerate | -0.591 | -0.609 |
| oleate | -0.493 | -0.404 |
| phosphatidylcholine | -0.487 | -0.598 |
| acetate | -0.579 | -1.107 |
| glucAc | 0.375 | -1.029 |
| Rv0950ko | -0.558 | 0.308 |
| Rv1096ko | -0.093 | 0.805 |
| Rv3684ko | -0.684 | 0.259 |
| delta_otsA_trehalose | -0.785 | 0.437 |