Top 10 genes with highest correlation to Rv3066/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0113/gmhA | (cc=0.4169) | info on Rv0113/gmhA |
| Rv0243/fadA2 | (cc=0.4069) | info on Rv0243/fadA2 |
| Rv3638/- | (cc=0.4034) | info on Rv3638/- |
| Rv2765/- | (cc=0.4021) | info on Rv2765/- |
| Rv0659c/mazF2 | (cc=0.4014) | info on Rv0659c/mazF2 |
| Rv0233/nrdB | (cc=0.4013) | info on Rv0233/nrdB |
| Rv1349/irtB | (cc=0.3909) | info on Rv1349/irtB |
| Rv1881c/lppE | (cc=0.3874) | info on Rv1881c/lppE |
| Rv3328c/sigJ | (cc=0.3849) | info on Rv3328c/sigJ |
| Rv0307c/- | (cc=0.3847) | info on Rv0307c/- |
Correlation of Rv3066/- with Rv0113/gmhA
Normalized LFCs for Rv3066/-:
(description and provenance of datasets)
| Rv3066/- | Rv0113/gmhA | |
| Fe_supp_jason_reseq | 3.647 | 2.595 |
| low_pH_jason_reseq | 0.371 | -0.831 |
| NO_jason_reseq | -2.625 | -1.536 |
| B6_jason_reseq | 0.736 | 3.067 |
| MHCII_jason_reseq | 2.556 | 2.446 |
| Isoniazid02 | -0.626 | 1.801 |
| Rifampicin4 | 1.01 | 0.1 |
| Ethambutol3 | -0.488 | 0.327 |
| Meropenem3 | -0.137 | -0.341 |
| Vancomycin16 | 0.438 | -0.098 |
| Rv2680_day32 | 1.042 | 0.0 |
| H37Rv_KO_MarP | -0.206 | 0.754 |
| hypoxia_3wks | 2.46 | -0.415 |
| hypoxia_6wks | -0.34 | -0.708 |
| glycerol | -1.954 | 0.398 |
| cholesterol | -2.77 | -0.353 |
| AJ | 1.857 | 0.874 |
| Bibs02 | 0.105 | 2.099 |
| Bibs02c | 0.179 | 2.536 |
| BL6 | -0.6 | -0.982 |
| BL6a | -0.142 | 1.936 |
| BXD01 | -0.625 | -0.079 |
| BXD010 | -0.36 | 0.273 |
| BXD011 | -0.948 | 0.097 |
| BXD03 | -1.062 | -1.526 |
| BXD04 | -1.024 | -0.5 |
| BXD05 | -0.378 | -2.089 |
| BXD06 | -0.941 | 0.051 |
| BXD07 | -0.407 | 0.227 |
| BXD08 | -0.013 | -0.053 |
| BXD09 | -0.548 | -0.886 |
| CAST | -0.045 | 1.552 |
| CCcont | 0.511 | -0.255 |
| DS01 | 2.038 | 2.712 |
| DS02 | 1.82 | 2.039 |
| DS04 | 0.922 | 2.791 |
| DS0c | 1.416 | 2.918 |
| GP01 | 0.084 | -1.236 |
| GP02 | 0.539 | 0.899 |
| GP0c | -0.163 | 0.416 |
| NOD | 0.291 | 1.671 |
| NZO | 0.095 | -0.207 |
| PWK | -0.29 | 0.6 |
| H37Rv_KO_CtpC | 0.167 | -0.065 |
| H37Rv_KO_CtpD | 0.73 | 1.187 |
| H37Rv_KO_Rv1272 | -0.471 | -0.415 |
| H37Rv_KO_SugABC | 0.171 | 1.38 |
| H37Rv_KO_MbtN | -0.788 | 1.197 |
| Trans05 | 0.062 | -0.689 |
| macrophage_unactivated | 0.799 | 0.12 |
| IL1 | -1.261 | -0.489 |
| Rapamycin | -0.826 | -1.396 |
| Tcell | 0.0 | -0.261 |
| GMCSF | 0.198 | 0.573 |
| IFNab | 0.227 | -0.916 |
| IFNg | -0.126 | -0.559 |
| IFNg_GMCSF1 | -0.789 | 0.682 |
| Rv1432_day32 | 0.48 | 2.356 |
| Rv1565c_day32 | 0.649 | -0.415 |
| secA2_input | -1.414 | -0.188 |
| delta_Rv3594 | 0.216 | 3.223 |
| delta_Rv3717 | -0.731 | 1.258 |
| delta_Rv3811 | -1.109 | 0.813 |
| delta_Rv0954 | -0.057 | 1.95 |
| PonA1 | -0.01 | 2.546 |
| EccD1_KO | -0.622 | -1.5 |
| EspI_KO | -0.054 | -2.524 |
| PE35_KO | 0.487 | -1.097 |
| PPE68_KO | -0.09 | -1.328 |
| glycerol2 | 0.0 | 0.311 |
| lignocerate | -0.591 | 0.868 |
| oleate | -0.493 | 0.588 |
| phosphatidylcholine | -0.487 | 0.496 |
| acetate | -0.579 | 0.836 |
| glucAc | 0.375 | 0.971 |
| Rv0950ko | -0.558 | 1.423 |
| Rv1096ko | -0.093 | -0.142 |
| Rv3684ko | -0.684 | 0.151 |
| delta_otsA_trehalose | -0.785 | 0.305 |