Top 10 genes with highest correlation to Rv3013/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1843c/guaB1 | (cc=0.4236) | info on Rv1843c/guaB1 |
| Rv1440/secG | (cc=0.4229) | info on Rv1440/secG |
| Rv3107c/agpS | (cc=0.384) | info on Rv3107c/agpS |
| Rv2521/bcp | (cc=0.3803) | info on Rv2521/bcp |
| Rv0366c/- | (cc=0.38) | info on Rv0366c/- |
| Rv0280/PPE3 | (cc=0.3746) | info on Rv0280/PPE3 |
| Rv2597/- | (cc=0.3586) | info on Rv2597/- |
| Rv0580c/- | (cc=0.3533) | info on Rv0580c/- |
| Rv2994/- | (cc=0.352) | info on Rv2994/- |
| Rv2400c/subI | (cc=0.3388) | info on Rv2400c/subI |
Correlation of Rv3013/- with Rv2521/bcp
Normalized LFCs for Rv3013/-:
(description and provenance of datasets)
| Rv3013/- | Rv2521/bcp | |
| Fe_supp_jason_reseq | -0.325 | -0.583 |
| low_pH_jason_reseq | -1.748 | -0.398 |
| NO_jason_reseq | -0.394 | 0.614 |
| B6_jason_reseq | 0.458 | 0.185 |
| MHCII_jason_reseq | 1.36 | -0.108 |
| Isoniazid02 | 0.162 | 0.313 |
| Rifampicin4 | -0.165 | -0.55 |
| Ethambutol3 | 0.091 | 0.337 |
| Meropenem3 | -0.173 | -0.364 |
| Vancomycin16 | 0.369 | 0.523 |
| Rv2680_day32 | 0.806 | 0.845 |
| H37Rv_KO_MarP | 0.373 | 0.488 |
| hypoxia_3wks | 0.231 | -0.674 |
| hypoxia_6wks | 0.01 | 0.388 |
| glycerol | -0.717 | -0.35 |
| cholesterol | -0.591 | 0.021 |
| AJ | 0.407 | 0.469 |
| Bibs02 | -0.94 | -0.842 |
| Bibs02c | -0.594 | -0.871 |
| BL6 | -0.301 | -0.305 |
| BL6a | -1.547 | -0.436 |
| BXD01 | -0.947 | -0.469 |
| BXD010 | 0.097 | 0.496 |
| BXD011 | -0.96 | -0.143 |
| BXD03 | -0.095 | 0.058 |
| BXD04 | -0.467 | -0.125 |
| BXD05 | 0.412 | 0.486 |
| BXD06 | -0.389 | -0.101 |
| BXD07 | -0.823 | -0.597 |
| BXD08 | -0.025 | -0.332 |
| BXD09 | -0.557 | -0.36 |
| CAST | -0.018 | -0.113 |
| CCcont | -0.68 | -0.528 |
| DS01 | -1.205 | -0.253 |
| DS02 | -1.536 | -0.739 |
| DS04 | -0.956 | -1.061 |
| DS0c | -0.954 | -0.903 |
| GP01 | -0.037 | 0.279 |
| GP02 | 0.864 | 1.562 |
| GP0c | -0.25 | 0.391 |
| NOD | -0.288 | -0.067 |
| NZO | 0.673 | 0.246 |
| PWK | 0.186 | -0.467 |
| H37Rv_KO_CtpC | 0.166 | -1.24 |
| H37Rv_KO_CtpD | 0.309 | 1.085 |
| H37Rv_KO_Rv1272 | -1.141 | -0.221 |
| H37Rv_KO_SugABC | 0.564 | 0.301 |
| H37Rv_KO_MbtN | -1.875 | -1.62 |
| Trans05 | -1.629 | -1.273 |
| macrophage_unactivated | -0.483 | 0.606 |
| IL1 | 0.718 | -0.027 |
| Rapamycin | -0.273 | 0.304 |
| Tcell | -1.668 | -0.228 |
| GMCSF | 0.578 | 0.066 |
| IFNab | 0.048 | 0.487 |
| IFNg | 0.099 | 0.2 |
| IFNg_GMCSF1 | 0.6 | -0.481 |
| Rv1432_day32 | 1.394 | 0.0 |
| Rv1565c_day32 | 2.194 | 0.169 |
| secA2_input | -0.792 | -0.451 |
| delta_Rv3594 | -0.67 | 1.219 |
| delta_Rv3717 | -0.386 | 0.63 |
| delta_Rv3811 | -0.529 | -0.018 |
| delta_Rv0954 | -0.308 | -0.505 |
| PonA1 | 0.082 | 1.03 |
| EccD1_KO | -2.375 | -0.276 |
| EspI_KO | -1.78 | -0.471 |
| PE35_KO | 1.216 | -0.245 |
| PPE68_KO | -0.176 | -0.739 |
| glycerol2 | -0.645 | 0.935 |
| lignocerate | -0.286 | 0.605 |
| oleate | -0.614 | -0.612 |
| phosphatidylcholine | 0.172 | 0.368 |
| acetate | -0.592 | -0.116 |
| glucAc | -0.455 | 0.656 |
| Rv0950ko | -0.305 | 0.724 |
| Rv1096ko | -0.259 | 0.585 |
| Rv3684ko | -0.904 | 1.055 |
| delta_otsA_trehalose | 0.523 | -0.711 |