Top 10 genes with highest correlation to Rv3013/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1843c/guaB1 | (cc=0.4236) | info on Rv1843c/guaB1 |
| Rv1440/secG | (cc=0.4229) | info on Rv1440/secG |
| Rv3107c/agpS | (cc=0.384) | info on Rv3107c/agpS |
| Rv2521/bcp | (cc=0.3803) | info on Rv2521/bcp |
| Rv0366c/- | (cc=0.38) | info on Rv0366c/- |
| Rv0280/PPE3 | (cc=0.3746) | info on Rv0280/PPE3 |
| Rv2597/- | (cc=0.3586) | info on Rv2597/- |
| Rv0580c/- | (cc=0.3533) | info on Rv0580c/- |
| Rv2994/- | (cc=0.352) | info on Rv2994/- |
| Rv2400c/subI | (cc=0.3388) | info on Rv2400c/subI |
Correlation of Rv3013/- with Rv2400c/subI
Normalized LFCs for Rv3013/-:
(description and provenance of datasets)
| Rv3013/- | Rv2400c/subI | |
| Fe_supp_jason_reseq | -0.325 | 0.766 |
| low_pH_jason_reseq | -1.748 | 0.0 |
| NO_jason_reseq | -0.394 | 0.0 |
| B6_jason_reseq | 0.458 | 0.0 |
| MHCII_jason_reseq | 1.36 | 0.0 |
| Isoniazid02 | 0.162 | -1.072 |
| Rifampicin4 | -0.165 | -1.681 |
| Ethambutol3 | 0.091 | -0.755 |
| Meropenem3 | -0.173 | -1.033 |
| Vancomycin16 | 0.369 | -1.647 |
| Rv2680_day32 | 0.806 | 0.0 |
| H37Rv_KO_MarP | 0.373 | -1.307 |
| hypoxia_3wks | 0.231 | 0.0 |
| hypoxia_6wks | 0.01 | 0.0 |
| glycerol | -0.717 | 0.0 |
| cholesterol | -0.591 | 0.0 |
| AJ | 0.407 | 0.0 |
| Bibs02 | -0.94 | 0.0 |
| Bibs02c | -0.594 | 0.0 |
| BL6 | -0.301 | 0.0 |
| BL6a | -1.547 | 0.0 |
| BXD01 | -0.947 | 0.0 |
| BXD010 | 0.097 | 0.0 |
| BXD011 | -0.96 | 0.0 |
| BXD03 | -0.095 | 0.0 |
| BXD04 | -0.467 | 0.0 |
| BXD05 | 0.412 | 0.0 |
| BXD06 | -0.389 | 0.0 |
| BXD07 | -0.823 | 0.0 |
| BXD08 | -0.025 | 0.0 |
| BXD09 | -0.557 | 0.0 |
| CAST | -0.018 | 0.0 |
| CCcont | -0.68 | 0.285 |
| DS01 | -1.205 | 0.0 |
| DS02 | -1.536 | 0.0 |
| DS04 | -0.956 | 0.0 |
| DS0c | -0.954 | 0.0 |
| GP01 | -0.037 | 0.0 |
| GP02 | 0.864 | 0.0 |
| GP0c | -0.25 | 0.0 |
| NOD | -0.288 | 0.0 |
| NZO | 0.673 | 0.0 |
| PWK | 0.186 | 0.0 |
| H37Rv_KO_CtpC | 0.166 | 0.0 |
| H37Rv_KO_CtpD | 0.309 | 0.127 |
| H37Rv_KO_Rv1272 | -1.141 | 0.0 |
| H37Rv_KO_SugABC | 0.564 | 0.0 |
| H37Rv_KO_MbtN | -1.875 | 0.0 |
| Trans05 | -1.629 | 0.0 |
| macrophage_unactivated | -0.483 | 0.0 |
| IL1 | 0.718 | 0.0 |
| Rapamycin | -0.273 | 0.0 |
| Tcell | -1.668 | 0.0 |
| GMCSF | 0.578 | 0.0 |
| IFNab | 0.048 | 0.0 |
| IFNg | 0.099 | 0.0 |
| IFNg_GMCSF1 | 0.6 | 0.0 |
| Rv1432_day32 | 1.394 | 0.0 |
| Rv1565c_day32 | 2.194 | 0.218 |
| secA2_input | -0.792 | -2.069 |
| delta_Rv3594 | -0.67 | 0.211 |
| delta_Rv3717 | -0.386 | 0.0 |
| delta_Rv3811 | -0.529 | 0.0 |
| delta_Rv0954 | -0.308 | 1.383 |
| PonA1 | 0.082 | 0.884 |
| EccD1_KO | -2.375 | -5.825 |
| EspI_KO | -1.78 | -6.0 |
| PE35_KO | 1.216 | 2.333 |
| PPE68_KO | -0.176 | -0.595 |
| glycerol2 | -0.645 | 0.0 |
| lignocerate | -0.286 | 0.0 |
| oleate | -0.614 | 0.0 |
| phosphatidylcholine | 0.172 | 0.0 |
| acetate | -0.592 | 0.229 |
| glucAc | -0.455 | 0.0 |
| Rv0950ko | -0.305 | -3.585 |
| Rv1096ko | -0.259 | -3.673 |
| Rv3684ko | -0.904 | -3.799 |
| delta_otsA_trehalose | 0.523 | 1.223 |