Top 10 genes with highest correlation to Rv3013/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1843c/guaB1 | (cc=0.4236) | info on Rv1843c/guaB1 |
| Rv1440/secG | (cc=0.4229) | info on Rv1440/secG |
| Rv3107c/agpS | (cc=0.384) | info on Rv3107c/agpS |
| Rv2521/bcp | (cc=0.3803) | info on Rv2521/bcp |
| Rv0366c/- | (cc=0.38) | info on Rv0366c/- |
| Rv0280/PPE3 | (cc=0.3746) | info on Rv0280/PPE3 |
| Rv2597/- | (cc=0.3586) | info on Rv2597/- |
| Rv0580c/- | (cc=0.3533) | info on Rv0580c/- |
| Rv2994/- | (cc=0.352) | info on Rv2994/- |
| Rv2400c/subI | (cc=0.3388) | info on Rv2400c/subI |
Correlation of Rv3013/- with Rv1843c/guaB1
Normalized LFCs for Rv3013/-:
(description and provenance of datasets)
| Rv3013/- | Rv1843c/guaB1 | |
| Fe_supp_jason_reseq | -0.325 | -0.403 |
| low_pH_jason_reseq | -1.748 | -0.975 |
| NO_jason_reseq | -0.394 | -0.567 |
| B6_jason_reseq | 0.458 | -0.19 |
| MHCII_jason_reseq | 1.36 | 1.146 |
| Isoniazid02 | 0.162 | 1.091 |
| Rifampicin4 | -0.165 | 0.574 |
| Ethambutol3 | 0.091 | 0.179 |
| Meropenem3 | -0.173 | -0.055 |
| Vancomycin16 | 0.369 | -0.05 |
| Rv2680_day32 | 0.806 | 2.007 |
| H37Rv_KO_MarP | 0.373 | 0.783 |
| hypoxia_3wks | 0.231 | 0.239 |
| hypoxia_6wks | 0.01 | -0.493 |
| glycerol | -0.717 | -0.645 |
| cholesterol | -0.591 | 0.017 |
| AJ | 0.407 | 0.862 |
| Bibs02 | -0.94 | -0.179 |
| Bibs02c | -0.594 | -0.324 |
| BL6 | -0.301 | -1.777 |
| BL6a | -1.547 | -1.212 |
| BXD01 | -0.947 | -1.101 |
| BXD010 | 0.097 | -1.622 |
| BXD011 | -0.96 | -1.358 |
| BXD03 | -0.095 | -1.788 |
| BXD04 | -0.467 | -1.515 |
| BXD05 | 0.412 | -1.235 |
| BXD06 | -0.389 | -1.553 |
| BXD07 | -0.823 | -1.45 |
| BXD08 | -0.025 | -1.506 |
| BXD09 | -0.557 | -1.151 |
| CAST | -0.018 | -0.052 |
| CCcont | -0.68 | -2.183 |
| DS01 | -1.205 | 0.082 |
| DS02 | -1.536 | 0.11 |
| DS04 | -0.956 | 0.218 |
| DS0c | -0.954 | -0.267 |
| GP01 | -0.037 | -0.566 |
| GP02 | 0.864 | -0.032 |
| GP0c | -0.25 | -1.036 |
| NOD | -0.288 | 0.913 |
| NZO | 0.673 | 0.974 |
| PWK | 0.186 | 0.342 |
| H37Rv_KO_CtpC | 0.166 | -0.47 |
| H37Rv_KO_CtpD | 0.309 | 0.564 |
| H37Rv_KO_Rv1272 | -1.141 | -0.247 |
| H37Rv_KO_SugABC | 0.564 | -0.323 |
| H37Rv_KO_MbtN | -1.875 | -0.388 |
| Trans05 | -1.629 | -0.483 |
| macrophage_unactivated | -0.483 | -1.947 |
| IL1 | 0.718 | -1.314 |
| Rapamycin | -0.273 | -1.412 |
| Tcell | -1.668 | -3.193 |
| GMCSF | 0.578 | -0.948 |
| IFNab | 0.048 | -1.793 |
| IFNg | 0.099 | -1.304 |
| IFNg_GMCSF1 | 0.6 | -1.376 |
| Rv1432_day32 | 1.394 | 2.018 |
| Rv1565c_day32 | 2.194 | 1.595 |
| secA2_input | -0.792 | -0.208 |
| delta_Rv3594 | -0.67 | 0.024 |
| delta_Rv3717 | -0.386 | -0.086 |
| delta_Rv3811 | -0.529 | 0.262 |
| delta_Rv0954 | -0.308 | -0.025 |
| PonA1 | 0.082 | -0.697 |
| EccD1_KO | -2.375 | -0.802 |
| EspI_KO | -1.78 | -0.938 |
| PE35_KO | 1.216 | -0.347 |
| PPE68_KO | -0.176 | -0.582 |
| glycerol2 | -0.645 | -0.106 |
| lignocerate | -0.286 | -1.463 |
| oleate | -0.614 | -1.422 |
| phosphatidylcholine | 0.172 | -0.457 |
| acetate | -0.592 | -0.451 |
| glucAc | -0.455 | -1.094 |
| Rv0950ko | -0.305 | -0.277 |
| Rv1096ko | -0.259 | -0.992 |
| Rv3684ko | -0.904 | -0.55 |
| delta_otsA_trehalose | 0.523 | 0.625 |