Top 10 genes with highest correlation to Rv2953/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0713/- | (cc=0.5446) | info on Rv0713/- |
| Rv2399c/cysT | (cc=0.5027) | info on Rv2399c/cysT |
| Rv3116/moeB2 | (cc=0.492) | info on Rv3116/moeB2 |
| Rv2429/ahpD | (cc=0.4832) | info on Rv2429/ahpD |
| Rv2400c/subI | (cc=0.4525) | info on Rv2400c/subI |
| Rv1810/- | (cc=0.4422) | info on Rv1810/- |
| Rv0431/- | (cc=0.442) | info on Rv0431/- |
| Rv2221c/glnE | (cc=0.4334) | info on Rv2221c/glnE |
| Rv2284/lipM | (cc=0.4193) | info on Rv2284/lipM |
| Rv2397c/cysA1 | (cc=0.4094) | info on Rv2397c/cysA1 |
Correlation of Rv2953/- with Rv0713/-
Normalized LFCs for Rv2953/-:
(description and provenance of datasets)
| Rv2953/- | Rv0713/- | |
| Fe_supp_jason_reseq | 1.462 | 1.217 |
| low_pH_jason_reseq | -0.663 | -0.4 |
| NO_jason_reseq | -0.614 | -0.223 |
| B6_jason_reseq | 0.252 | 0.443 |
| MHCII_jason_reseq | 0.553 | 1.131 |
| Isoniazid02 | -0.786 | -1.464 |
| Rifampicin4 | 0.217 | 0.146 |
| Ethambutol3 | -0.344 | -0.872 |
| Meropenem3 | -1.232 | -1.261 |
| Vancomycin16 | -0.225 | -0.204 |
| Rv2680_day32 | -0.382 | -0.5 |
| H37Rv_KO_MarP | -0.164 | 0.491 |
| hypoxia_3wks | 0.618 | 0.367 |
| hypoxia_6wks | 0.413 | 0.355 |
| glycerol | -0.715 | -0.781 |
| cholesterol | -0.334 | -0.668 |
| AJ | -1.171 | -0.203 |
| Bibs02 | 0.925 | -0.191 |
| Bibs02c | 0.394 | -0.149 |
| BL6 | 0.657 | -0.166 |
| BL6a | 0.504 | -0.228 |
| BXD01 | 0.543 | 0.261 |
| BXD010 | 0.275 | 0.199 |
| BXD011 | 0.15 | -0.271 |
| BXD03 | -0.29 | -0.077 |
| BXD04 | 0.153 | 0.179 |
| BXD05 | 0.51 | 0.188 |
| BXD06 | 0.359 | 0.225 |
| BXD07 | 0.0 | -0.264 |
| BXD08 | 0.285 | 0.496 |
| BXD09 | 0.026 | -0.211 |
| CAST | -0.602 | -0.527 |
| CCcont | 0.54 | 0.171 |
| DS01 | 0.116 | -0.494 |
| DS02 | 0.616 | -0.273 |
| DS04 | 0.55 | -0.467 |
| DS0c | 0.328 | -0.405 |
| GP01 | -0.489 | -0.61 |
| GP02 | -1.465 | -1.011 |
| GP0c | 0.146 | -1.142 |
| NOD | -0.68 | -0.386 |
| NZO | -0.522 | -1.05 |
| PWK | -0.347 | 0.148 |
| H37Rv_KO_CtpC | -0.252 | -0.585 |
| H37Rv_KO_CtpD | -0.878 | 0.152 |
| H37Rv_KO_Rv1272 | -0.741 | -0.472 |
| H37Rv_KO_SugABC | 0.166 | 0.26 |
| H37Rv_KO_MbtN | 0.617 | 0.537 |
| Trans05 | 0.009 | 0.346 |
| macrophage_unactivated | 0.407 | 0.249 |
| IL1 | -0.042 | -0.567 |
| Rapamycin | -0.224 | -0.832 |
| Tcell | 0.668 | -0.466 |
| GMCSF | 0.074 | 0.066 |
| IFNab | -0.021 | -0.475 |
| IFNg | -0.337 | -0.615 |
| IFNg_GMCSF1 | -0.091 | -0.899 |
| Rv1432_day32 | -0.458 | -0.72 |
| Rv1565c_day32 | 0.662 | -0.158 |
| secA2_input | -0.897 | -0.495 |
| delta_Rv3594 | 0.307 | 0.081 |
| delta_Rv3717 | 0.029 | -0.063 |
| delta_Rv3811 | -0.158 | 0.171 |
| delta_Rv0954 | -0.137 | -0.191 |
| PonA1 | 0.426 | -0.063 |
| EccD1_KO | -0.701 | 0.306 |
| EspI_KO | -0.719 | 0.533 |
| PE35_KO | 0.709 | 0.123 |
| PPE68_KO | 0.403 | 0.134 |
| glycerol2 | 0.594 | 0.751 |
| lignocerate | 0.427 | 0.581 |
| oleate | 0.05 | 0.784 |
| phosphatidylcholine | 0.445 | 0.829 |
| acetate | -0.788 | -0.248 |
| glucAc | -0.298 | -0.525 |
| Rv0950ko | -0.657 | -0.163 |
| Rv1096ko | -1.243 | -0.377 |
| Rv3684ko | -1.251 | -0.652 |
| delta_otsA_trehalose | 0.322 | 1.203 |