TnSeqCorr

Top 10 genes with highest correlation to Rv2860c/glnA4:

update plotcorrelationlink to info on gene
Rv0959/- (cc=0.6171) info on Rv0959/-
Rv3062/ligB (cc=0.5403) info on Rv3062/ligB
Rv3655c/- (cc=0.5328) info on Rv3655c/-
Rv2484c/- (cc=0.5218) info on Rv2484c/-
Rv1180/pks3 (cc=0.5176) info on Rv1180/pks3
Rv2236c/cobD (cc=0.5173) info on Rv2236c/cobD
Rv0569/- (cc=0.5139) info on Rv0569/-
Rv3371/- (cc=0.5112) info on Rv3371/-
Rv3652/PE_PGRS60 (cc=0.4998) info on Rv3652/PE_PGRS60
Rv2915c/- (cc=0.499) info on Rv2915c/-

Correlation of Rv2860c/glnA4 with Rv2236c/cobD

Normalized LFCs for Rv2860c/glnA4:
(description and provenance of datasets)
Rv2860c/glnA4Rv2236c/cobD
Fe_supp_jason_reseq

0.272

-0.369

low_pH_jason_reseq

0.348

1.057

NO_jason_reseq

-0.163

0.845

B6_jason_reseq

1.016

1.09

MHCII_jason_reseq

1.38

0.977

Isoniazid02

0.528

0.304

Rifampicin4

-0.206

1.438

Ethambutol3

2.104

0.384

Meropenem3

0.435

0.636

Vancomycin16

0.443

0.48

Rv2680_day32

0.795

-0.359

H37Rv_KO_MarP

-0.167

-0.128

hypoxia_3wks

-0.144

-1.579

hypoxia_6wks

-0.205

-1.748

glycerol

0.878

0.532

cholesterol

0.406

0.238

AJ

0.457

0.425

Bibs02

-0.015

0.352

Bibs02c

-0.033

0.759

BL6

-0.438

-0.852

BL6a

-0.29

-0.67

BXD01

0.13

-0.153

BXD010

-0.299

-0.986

BXD011

-0.01

-1.612

BXD03

0.183

-0.732

BXD04

-0.216

-0.1

BXD05

0.309

-1.516

BXD06

-0.124

-0.537

BXD07

-0.057

-0.857

BXD08

0.152

-0.513

BXD09

-0.299

-1.369

CAST

0.279

-0.48

CCcont

-0.379

-1.414

DS01

1.027

0.226

DS02

0.61

0.789

DS04

0.904

1.152

DS0c

1.193

-0.074

GP01

-0.906

-0.304

GP02

0.944

0.917

GP0c

-0.984

-1.195

NOD

-0.308

0.049

NZO

0.535

0.231

PWK

0.689

-0.463

H37Rv_KO_CtpC

-0.804

-1.777

H37Rv_KO_CtpD

-1.941

-1.753

H37Rv_KO_Rv1272

0.109

-1.296

H37Rv_KO_SugABC

-0.325

-1.183

H37Rv_KO_MbtN

-0.907

-1.842

Trans05

0.292

-0.976

macrophage_unactivated

0.679

0.136

IL1

0.383

-0.338

Rapamycin

0.147

-0.068

Tcell

-0.459

-1.401

GMCSF

0.28

-0.766

IFNab

0.036

-0.345

IFNg

-0.235

-1.31

IFNg_GMCSF1

0.151

0.396

Rv1432_day32

0.738

1.52

Rv1565c_day32

-0.3

0.0

secA2_input

0.715

-0.944

delta_Rv3594

0.142

0.428

delta_Rv3717

0.117

-0.357

delta_Rv3811

-0.274

0.076

delta_Rv0954

-0.578

0.159

PonA1

0.358

0.789

EccD1_KO

0.441

0.559

EspI_KO

0.168

-1.489

PE35_KO

0.598

-0.922

PPE68_KO

0.429

-0.809

glycerol2

0.158

-0.974

lignocerate

0.138

-0.406

oleate

0.73

-0.549

phosphatidylcholine

0.556

0.115

acetate

-0.1

-0.465

glucAc

-0.079

0.242

Rv0950ko

0.425

0.286

Rv1096ko

0.621

0.467

Rv3684ko

0.622

-0.219

delta_otsA_trehalose

0.045

0.373