Top 10 genes with highest correlation to Rv2805/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0521/- | (cc=0.4595) | info on Rv0521/- |
| Rv2657c/- | (cc=0.3982) | info on Rv2657c/- |
| Rv2317/uspB | (cc=0.3904) | info on Rv2317/uspB |
| Rv2055c/rpsR2 | (cc=0.3859) | info on Rv2055c/rpsR2 |
| Rv0899/ompA | (cc=0.3855) | info on Rv0899/ompA |
| Rv2804c/- | (cc=0.3846) | info on Rv2804c/- |
| Rv0319/pcp | (cc=0.3836) | info on Rv0319/pcp |
| Rv0616c/- | (cc=0.3718) | info on Rv0616c/- |
| Rv2212/- | (cc=0.3709) | info on Rv2212/- |
| Rv2046/lppI | (cc=0.366) | info on Rv2046/lppI |
Correlation of Rv2805/- with Rv2046/lppI
Normalized LFCs for Rv2805/-:
(description and provenance of datasets)
| Rv2805/- | Rv2046/lppI | |
| Fe_supp_jason_reseq | -0.491 | -0.434 |
| low_pH_jason_reseq | 0.679 | 0.12 |
| NO_jason_reseq | 1.04 | -0.092 |
| B6_jason_reseq | -0.088 | -0.222 |
| MHCII_jason_reseq | -1.231 | -0.797 |
| Isoniazid02 | 0.125 | -0.057 |
| Rifampicin4 | 1.592 | 0.414 |
| Ethambutol3 | 0.432 | 0.485 |
| Meropenem3 | 0.689 | 2.402 |
| Vancomycin16 | 0.154 | -0.141 |
| Rv2680_day32 | 1.172 | -0.004 |
| H37Rv_KO_MarP | 0.198 | -0.063 |
| hypoxia_3wks | -1.176 | -0.247 |
| hypoxia_6wks | -0.284 | -0.365 |
| glycerol | 0.455 | 0.724 |
| cholesterol | 0.477 | 0.318 |
| AJ | -0.245 | -0.387 |
| Bibs02 | -0.58 | -0.142 |
| Bibs02c | -0.925 | 0.082 |
| BL6 | 1.296 | -0.587 |
| BL6a | -0.742 | -0.175 |
| BXD01 | -0.471 | 0.007 |
| BXD010 | 0.945 | -0.26 |
| BXD011 | -0.122 | -0.243 |
| BXD03 | -0.506 | -0.225 |
| BXD04 | 0.022 | -0.376 |
| BXD05 | -0.226 | -1.323 |
| BXD06 | -0.527 | 0.04 |
| BXD07 | -0.051 | 0.253 |
| BXD08 | 1.251 | 0.42 |
| BXD09 | -0.42 | -0.087 |
| CAST | -0.412 | -0.716 |
| CCcont | -0.333 | 0.234 |
| DS01 | -0.133 | 0.508 |
| DS02 | 0.717 | 0.662 |
| DS04 | 1.176 | -0.852 |
| DS0c | -1.318 | 0.652 |
| GP01 | -0.998 | -1.91 |
| GP02 | -0.67 | -0.943 |
| GP0c | 0.442 | -0.981 |
| NOD | 1.733 | 0.023 |
| NZO | -0.585 | 0.059 |
| PWK | 0.26 | 0.038 |
| H37Rv_KO_CtpC | 2.482 | -0.041 |
| H37Rv_KO_CtpD | -2.69 | -1.594 |
| H37Rv_KO_Rv1272 | -1.281 | -0.546 |
| H37Rv_KO_SugABC | 0.638 | -0.481 |
| H37Rv_KO_MbtN | 0.042 | 0.005 |
| Trans05 | 0.637 | 0.422 |
| macrophage_unactivated | -0.477 | -0.076 |
| IL1 | -1.225 | 1.032 |
| Rapamycin | -0.203 | -0.485 |
| Tcell | -0.57 | -0.238 |
| GMCSF | 1.167 | 0.319 |
| IFNab | -0.807 | -0.399 |
| IFNg | -1.232 | 0.438 |
| IFNg_GMCSF1 | 0.22 | 0.644 |
| Rv1432_day32 | 0.0 | -0.085 |
| Rv1565c_day32 | -1.109 | 0.245 |
| secA2_input | 0.122 | -0.623 |
| delta_Rv3594 | 1.19 | 1.074 |
| delta_Rv3717 | 1.167 | 1.258 |
| delta_Rv3811 | 0.4 | 1.172 |
| delta_Rv0954 | 1.824 | 1.864 |
| PonA1 | 2.412 | 1.483 |
| EccD1_KO | 0.0 | -0.197 |
| EspI_KO | 1.012 | -0.508 |
| PE35_KO | -0.038 | 0.169 |
| PPE68_KO | -0.211 | -0.163 |
| glycerol2 | 0.289 | 0.481 |
| lignocerate | 0.793 | 0.953 |
| oleate | -0.899 | 0.461 |
| phosphatidylcholine | 0.807 | 0.889 |
| acetate | -0.015 | 0.329 |
| glucAc | 1.02 | 0.272 |
| Rv0950ko | 0.308 | 0.826 |
| Rv1096ko | -1.221 | 1.451 |
| Rv3684ko | -0.92 | -0.18 |
| delta_otsA_trehalose | -0.122 | -0.043 |