TnSeqCorr

Top 10 genes with highest correlation to Rv2680/-:

update plotcorrelationlink to info on gene
Rv2894c/xerC (cc=0.5706) info on Rv2894c/xerC
Rv1638/uvrA (cc=0.5691) info on Rv1638/uvrA
Rv1173/fbiC (cc=0.5554) info on Rv1173/fbiC
Rv1633/uvrB (cc=0.5535) info on Rv1633/uvrB
Rv1100/- (cc=0.5464) info on Rv1100/-
Rv1432/- (cc=0.5449) info on Rv1432/-
Rv3261/fbiA (cc=0.53) info on Rv3261/fbiA
Rv0470c/pcaA (cc=0.5283) info on Rv0470c/pcaA
Rv2737c/recA (cc=0.524) info on Rv2737c/recA
Rv3855/ethR (cc=0.5162) info on Rv3855/ethR

Correlation of Rv2680/- with Rv2737c/recA

Normalized LFCs for Rv2680/-:
(description and provenance of datasets)
Rv2680/-Rv2737c/recA
Fe_supp_jason_reseq

2.324

3.01

low_pH_jason_reseq

2.652

0.768

NO_jason_reseq

-0.667

0.446

B6_jason_reseq

-1.162

0.0

MHCII_jason_reseq

-0.932

0.166

Isoniazid02

-0.78

0.358

Rifampicin4

2.128

-0.563

Ethambutol3

4.228

0.314

Meropenem3

2.207

-0.188

Vancomycin16

-1.236

-1.141

Rv2680_day32

0.0

-0.588

H37Rv_KO_MarP

-1.216

-1.135

hypoxia_3wks

-1.655

-1.579

hypoxia_6wks

-0.867

-1.748

glycerol

0.822

2.478

cholesterol

-0.151

1.44

AJ

-1.798

-0.471

Bibs02

-0.519

-0.24

Bibs02c

-0.336

-0.424

BL6

0.175

0.145

BL6a

0.096

0.438

BXD01

-0.136

0.077

BXD010

1.162

0.345

BXD011

0.178

0.711

BXD03

0.066

-0.177

BXD04

0.06

0.391

BXD05

0.065

0.297

BXD06

0.351

-0.084

BXD07

0.0

0.437

BXD08

0.126

0.225

BXD09

-0.147

0.566

CAST

-0.654

-0.145

CCcont

2.796

2.295

DS01

0.527

-0.149

DS02

-0.618

0.252

DS04

0.51

0.0

DS0c

-0.479

-0.284

GP01

-0.765

-0.449

GP02

-0.486

0.184

GP0c

-0.066

0.22

NOD

-0.496

0.905

NZO

-1.348

0.338

PWK

-0.205

-0.398

H37Rv_KO_CtpC

0.297

-0.213

H37Rv_KO_CtpD

1.009

0.878

H37Rv_KO_Rv1272

0.315

0.568

H37Rv_KO_SugABC

0.692

1.288

H37Rv_KO_MbtN

1.441

0.576

Trans05

0.0

0.906

macrophage_unactivated

0.268

0.0

IL1

-0.131

-0.831

Rapamycin

0.387

-0.555

Tcell

0.785

0.0

GMCSF

-0.238

0.0

IFNab

0.13

0.922

IFNg

-0.369

-0.233

IFNg_GMCSF1

-1.442

0.503

Rv1432_day32

-2.188

-0.301

Rv1565c_day32

0.093

-1.14

secA2_input

-0.74

-0.247

delta_Rv3594

-0.226

1.06

delta_Rv3717

-1.304

-0.331

delta_Rv3811

-0.402

0.036

delta_Rv0954

0.132

0.99

PonA1

1.204

-0.175

EccD1_KO

0.546

0.072

EspI_KO

-0.471

0.188

PE35_KO

-0.117

1.75

PPE68_KO

-0.323

1.363

glycerol2

-2.595

-1.883

lignocerate

-2.356

-1.506

oleate

-2.626

-1.905

phosphatidylcholine

-2.189

-1.661

acetate

0.143

0.274

glucAc

0.743

-0.118

Rv0950ko

-0.829

-0.25

Rv1096ko

-0.829

-0.338

Rv3684ko

-1.264

0.174

delta_otsA_trehalose

-0.681

1.013