Top 10 genes with highest correlation to Rv2680/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2894c/xerC | (cc=0.5706) | info on Rv2894c/xerC |
| Rv1638/uvrA | (cc=0.5691) | info on Rv1638/uvrA |
| Rv1173/fbiC | (cc=0.5554) | info on Rv1173/fbiC |
| Rv1633/uvrB | (cc=0.5535) | info on Rv1633/uvrB |
| Rv1100/- | (cc=0.5464) | info on Rv1100/- |
| Rv1432/- | (cc=0.5449) | info on Rv1432/- |
| Rv3261/fbiA | (cc=0.53) | info on Rv3261/fbiA |
| Rv0470c/pcaA | (cc=0.5283) | info on Rv0470c/pcaA |
| Rv2737c/recA | (cc=0.524) | info on Rv2737c/recA |
| Rv3855/ethR | (cc=0.5162) | info on Rv3855/ethR |
Correlation of Rv2680/- with Rv1638/uvrA
Normalized LFCs for Rv2680/-:
(description and provenance of datasets)
| Rv2680/- | Rv1638/uvrA | |
| Fe_supp_jason_reseq | 2.324 | 2.005 |
| low_pH_jason_reseq | 2.652 | -0.842 |
| NO_jason_reseq | -0.667 | -0.874 |
| B6_jason_reseq | -1.162 | -1.019 |
| MHCII_jason_reseq | -0.932 | -1.251 |
| Isoniazid02 | -0.78 | -0.061 |
| Rifampicin4 | 2.128 | -1.11 |
| Ethambutol3 | 4.228 | 0.542 |
| Meropenem3 | 2.207 | -0.628 |
| Vancomycin16 | -1.236 | -0.764 |
| Rv2680_day32 | 0.0 | 0.0 |
| H37Rv_KO_MarP | -1.216 | -0.563 |
| hypoxia_3wks | -1.655 | -1.204 |
| hypoxia_6wks | -0.867 | -1.817 |
| glycerol | 0.822 | 1.654 |
| cholesterol | -0.151 | 0.773 |
| AJ | -1.798 | -0.242 |
| Bibs02 | -0.519 | -0.294 |
| Bibs02c | -0.336 | 0.382 |
| BL6 | 0.175 | 0.63 |
| BL6a | 0.096 | 0.997 |
| BXD01 | -0.136 | 0.486 |
| BXD010 | 1.162 | -0.206 |
| BXD011 | 0.178 | 0.475 |
| BXD03 | 0.066 | 0.189 |
| BXD04 | 0.06 | 0.372 |
| BXD05 | 0.065 | 0.3 |
| BXD06 | 0.351 | 0.498 |
| BXD07 | 0.0 | 0.194 |
| BXD08 | 0.126 | 0.297 |
| BXD09 | -0.147 | 0.572 |
| CAST | -0.654 | -0.809 |
| CCcont | 2.796 | 2.708 |
| DS01 | 0.527 | -0.12 |
| DS02 | -0.618 | 0.0 |
| DS04 | 0.51 | 0.094 |
| DS0c | -0.479 | 0.652 |
| GP01 | -0.765 | -0.28 |
| GP02 | -0.486 | 0.339 |
| GP0c | -0.066 | 0.942 |
| NOD | -0.496 | -1.126 |
| NZO | -1.348 | -0.701 |
| PWK | -0.205 | -0.433 |
| H37Rv_KO_CtpC | 0.297 | 1.331 |
| H37Rv_KO_CtpD | 1.009 | 0.558 |
| H37Rv_KO_Rv1272 | 0.315 | 0.71 |
| H37Rv_KO_SugABC | 0.692 | 1.472 |
| H37Rv_KO_MbtN | 1.441 | 1.713 |
| Trans05 | 0.0 | 0.344 |
| macrophage_unactivated | 0.268 | 1.382 |
| IL1 | -0.131 | -0.436 |
| Rapamycin | 0.387 | -0.295 |
| Tcell | 0.785 | 0.0 |
| GMCSF | -0.238 | -0.671 |
| IFNab | 0.13 | 0.771 |
| IFNg | -0.369 | -0.679 |
| IFNg_GMCSF1 | -1.442 | -0.625 |
| Rv1432_day32 | -2.188 | -1.562 |
| Rv1565c_day32 | 0.093 | -0.269 |
| secA2_input | -0.74 | 0.783 |
| delta_Rv3594 | -0.226 | 0.39 |
| delta_Rv3717 | -1.304 | -0.415 |
| delta_Rv3811 | -0.402 | 0.095 |
| delta_Rv0954 | 0.132 | 0.499 |
| PonA1 | 1.204 | -0.504 |
| EccD1_KO | 0.546 | 0.329 |
| EspI_KO | -0.471 | -0.128 |
| PE35_KO | -0.117 | 0.817 |
| PPE68_KO | -0.323 | 1.161 |
| glycerol2 | -2.595 | -1.562 |
| lignocerate | -2.356 | -1.816 |
| oleate | -2.626 | -1.904 |
| phosphatidylcholine | -2.189 | -2.088 |
| acetate | 0.143 | -0.143 |
| glucAc | 0.743 | 0.356 |
| Rv0950ko | -0.829 | -0.302 |
| Rv1096ko | -0.829 | -0.663 |
| Rv3684ko | -1.264 | -0.72 |
| delta_otsA_trehalose | -0.681 | 0.081 |