Top 10 genes with highest correlation to Rv2680/-:
update plot | correlation | link to info on gene |
---|---|---|
Rv2894c/xerC | (cc=0.5706) | info on Rv2894c/xerC |
Rv1638/uvrA | (cc=0.5691) | info on Rv1638/uvrA |
Rv1173/fbiC | (cc=0.5554) | info on Rv1173/fbiC |
Rv1633/uvrB | (cc=0.5535) | info on Rv1633/uvrB |
Rv1100/- | (cc=0.5464) | info on Rv1100/- |
Rv1432/- | (cc=0.5449) | info on Rv1432/- |
Rv3261/fbiA | (cc=0.53) | info on Rv3261/fbiA |
Rv0470c/pcaA | (cc=0.5283) | info on Rv0470c/pcaA |
Rv2737c/recA | (cc=0.524) | info on Rv2737c/recA |
Rv3855/ethR | (cc=0.5162) | info on Rv3855/ethR |
Correlation of Rv2680/- with Rv1173/fbiC
Normalized LFCs for Rv2680/-:
(description and provenance of datasets)
Rv2680/- | Rv1173/fbiC | |
Fe_supp_jason_reseq | 2.324 | 0.8 |
low_pH_jason_reseq | 2.652 | 0.124 |
NO_jason_reseq | -0.667 | -0.42 |
B6_jason_reseq | -1.162 | 0.16 |
MHCII_jason_reseq | -0.932 | 0.27 |
Isoniazid02 | -0.78 | 2.424 |
Rifampicin4 | 2.128 | 0.931 |
Ethambutol3 | 4.228 | 1.147 |
Meropenem3 | 2.207 | 1.23 |
Vancomycin16 | -1.236 | 0.546 |
Rv2680_day32 | 0.0 | -1.189 |
H37Rv_KO_MarP | -1.216 | -0.412 |
hypoxia_3wks | -1.655 | -0.478 |
hypoxia_6wks | -0.867 | -1.539 |
glycerol | 0.822 | 1.128 |
cholesterol | -0.151 | 0.583 |
AJ | -1.798 | 0.513 |
Bibs02 | -0.519 | 0.0 |
Bibs02c | -0.336 | 0.355 |
BL6 | 0.175 | -0.456 |
BL6a | 0.096 | 0.336 |
BXD01 | -0.136 | 0.151 |
BXD010 | 1.162 | -0.168 |
BXD011 | 0.178 | -0.167 |
BXD03 | 0.066 | 0.08 |
BXD04 | 0.06 | -0.347 |
BXD05 | 0.065 | -0.176 |
BXD06 | 0.351 | 0.155 |
BXD07 | 0.0 | 0.373 |
BXD08 | 0.126 | -0.485 |
BXD09 | -0.147 | 0.163 |
CAST | -0.654 | -0.302 |
CCcont | 2.796 | 1.832 |
DS01 | 0.527 | 1.783 |
DS02 | -0.618 | 1.134 |
DS04 | 0.51 | 1.834 |
DS0c | -0.479 | 1.287 |
GP01 | -0.765 | -0.548 |
GP02 | -0.486 | -0.462 |
GP0c | -0.066 | -0.591 |
NOD | -0.496 | -0.295 |
NZO | -1.348 | -0.262 |
PWK | -0.205 | -0.398 |
H37Rv_KO_CtpC | 0.297 | 0.785 |
H37Rv_KO_CtpD | 1.009 | 1.374 |
H37Rv_KO_Rv1272 | 0.315 | 0.445 |
H37Rv_KO_SugABC | 0.692 | 0.168 |
H37Rv_KO_MbtN | 1.441 | 0.866 |
Trans05 | 0.0 | 0.631 |
macrophage_unactivated | 0.268 | 0.783 |
IL1 | -0.131 | 0.258 |
Rapamycin | 0.387 | 0.0 |
Tcell | 0.785 | 0.554 |
GMCSF | -0.238 | 1.035 |
IFNab | 0.13 | 0.0 |
IFNg | -0.369 | -0.516 |
IFNg_GMCSF1 | -1.442 | 0.534 |
Rv1432_day32 | -2.188 | -0.164 |
Rv1565c_day32 | 0.093 | 0.986 |
secA2_input | -0.74 | -1.154 |
delta_Rv3594 | -0.226 | 0.422 |
delta_Rv3717 | -1.304 | -1.688 |
delta_Rv3811 | -0.402 | 0.457 |
delta_Rv0954 | 0.132 | 1.388 |
PonA1 | 1.204 | 0.919 |
EccD1_KO | 0.546 | -1.273 |
EspI_KO | -0.471 | -0.516 |
PE35_KO | -0.117 | 1.508 |
PPE68_KO | -0.323 | 0.595 |
glycerol2 | -2.595 | -1.645 |
lignocerate | -2.356 | -3.039 |
oleate | -2.626 | -2.915 |
phosphatidylcholine | -2.189 | -3.808 |
acetate | 0.143 | 0.203 |
glucAc | 0.743 | -0.246 |
Rv0950ko | -0.829 | -0.546 |
Rv1096ko | -0.829 | -1.034 |
Rv3684ko | -1.264 | -1.055 |
delta_otsA_trehalose | -0.681 | 0.414 |