TnSeqCorr

Top 10 genes with highest correlation to Rv2680/-:

update plotcorrelationlink to info on gene
Rv2894c/xerC (cc=0.5706) info on Rv2894c/xerC
Rv1638/uvrA (cc=0.5691) info on Rv1638/uvrA
Rv1173/fbiC (cc=0.5554) info on Rv1173/fbiC
Rv1633/uvrB (cc=0.5535) info on Rv1633/uvrB
Rv1100/- (cc=0.5464) info on Rv1100/-
Rv1432/- (cc=0.5449) info on Rv1432/-
Rv3261/fbiA (cc=0.53) info on Rv3261/fbiA
Rv0470c/pcaA (cc=0.5283) info on Rv0470c/pcaA
Rv2737c/recA (cc=0.524) info on Rv2737c/recA
Rv3855/ethR (cc=0.5162) info on Rv3855/ethR

Correlation of Rv2680/- with Rv1173/fbiC

Normalized LFCs for Rv2680/-:
(description and provenance of datasets)
Rv2680/-Rv1173/fbiC
Fe_supp_jason_reseq

2.324

0.8

low_pH_jason_reseq

2.652

0.124

NO_jason_reseq

-0.667

-0.42

B6_jason_reseq

-1.162

0.16

MHCII_jason_reseq

-0.932

0.27

Isoniazid02

-0.78

2.424

Rifampicin4

2.128

0.931

Ethambutol3

4.228

1.147

Meropenem3

2.207

1.23

Vancomycin16

-1.236

0.546

Rv2680_day32

0.0

-1.189

H37Rv_KO_MarP

-1.216

-0.412

hypoxia_3wks

-1.655

-0.478

hypoxia_6wks

-0.867

-1.539

glycerol

0.822

1.128

cholesterol

-0.151

0.583

AJ

-1.798

0.513

Bibs02

-0.519

0.0

Bibs02c

-0.336

0.355

BL6

0.175

-0.456

BL6a

0.096

0.336

BXD01

-0.136

0.151

BXD010

1.162

-0.168

BXD011

0.178

-0.167

BXD03

0.066

0.08

BXD04

0.06

-0.347

BXD05

0.065

-0.176

BXD06

0.351

0.155

BXD07

0.0

0.373

BXD08

0.126

-0.485

BXD09

-0.147

0.163

CAST

-0.654

-0.302

CCcont

2.796

1.832

DS01

0.527

1.783

DS02

-0.618

1.134

DS04

0.51

1.834

DS0c

-0.479

1.287

GP01

-0.765

-0.548

GP02

-0.486

-0.462

GP0c

-0.066

-0.591

NOD

-0.496

-0.295

NZO

-1.348

-0.262

PWK

-0.205

-0.398

H37Rv_KO_CtpC

0.297

0.785

H37Rv_KO_CtpD

1.009

1.374

H37Rv_KO_Rv1272

0.315

0.445

H37Rv_KO_SugABC

0.692

0.168

H37Rv_KO_MbtN

1.441

0.866

Trans05

0.0

0.631

macrophage_unactivated

0.268

0.783

IL1

-0.131

0.258

Rapamycin

0.387

0.0

Tcell

0.785

0.554

GMCSF

-0.238

1.035

IFNab

0.13

0.0

IFNg

-0.369

-0.516

IFNg_GMCSF1

-1.442

0.534

Rv1432_day32

-2.188

-0.164

Rv1565c_day32

0.093

0.986

secA2_input

-0.74

-1.154

delta_Rv3594

-0.226

0.422

delta_Rv3717

-1.304

-1.688

delta_Rv3811

-0.402

0.457

delta_Rv0954

0.132

1.388

PonA1

1.204

0.919

EccD1_KO

0.546

-1.273

EspI_KO

-0.471

-0.516

PE35_KO

-0.117

1.508

PPE68_KO

-0.323

0.595

glycerol2

-2.595

-1.645

lignocerate

-2.356

-3.039

oleate

-2.626

-2.915

phosphatidylcholine

-2.189

-3.808

acetate

0.143

0.203

glucAc

0.743

-0.246

Rv0950ko

-0.829

-0.546

Rv1096ko

-0.829

-1.034

Rv3684ko

-1.264

-1.055

delta_otsA_trehalose

-0.681

0.414