Top 10 genes with highest correlation to Rv2662/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2911/dacB2 | (cc=0.4301) | info on Rv2911/dacB2 |
| Rv0516c/- | (cc=0.3774) | info on Rv0516c/- |
| Rv2148c/- | (cc=0.356) | info on Rv2148c/- |
| Rv1477/ripA | (cc=0.3539) | info on Rv1477/ripA |
| Rv3856c/- | (cc=0.3485) | info on Rv3856c/- |
| Rv1527c/pks5 | (cc=0.3478) | info on Rv1527c/pks5 |
| Rv1089/PE10 | (cc=0.3455) | info on Rv1089/PE10 |
| Rv0969/ctpV | (cc=0.3432) | info on Rv0969/ctpV |
| Rv0630c/recB | (cc=0.3416) | info on Rv0630c/recB |
| Rv1961/- | (cc=0.3411) | info on Rv1961/- |
Correlation of Rv2662/- with Rv1477/ripA
Normalized LFCs for Rv2662/-:
(description and provenance of datasets)
| Rv2662/- | Rv1477/ripA | |
| Fe_supp_jason_reseq | 1.86 | -0.846 |
| low_pH_jason_reseq | -0.547 | -1.937 |
| NO_jason_reseq | -0.05 | -2.024 |
| B6_jason_reseq | -0.057 | -0.856 |
| MHCII_jason_reseq | -1.027 | -1.244 |
| Isoniazid02 | 0.009 | 0.469 |
| Rifampicin4 | -0.068 | -0.712 |
| Ethambutol3 | -0.185 | 0.0 |
| Meropenem3 | -0.165 | -0.315 |
| Vancomycin16 | 0.684 | -0.334 |
| Rv2680_day32 | -0.228 | -0.359 |
| H37Rv_KO_MarP | 0.862 | -2.565 |
| hypoxia_3wks | -0.124 | -0.295 |
| hypoxia_6wks | 0.077 | -1.297 |
| glycerol | -0.161 | 1.4 |
| cholesterol | -0.61 | 0.246 |
| AJ | 0.844 | -0.304 |
| Bibs02 | 0.984 | -1.015 |
| Bibs02c | 0.556 | 0.0 |
| BL6 | 0.161 | -0.694 |
| BL6a | 0.818 | -1.099 |
| BXD01 | -0.368 | -0.723 |
| BXD010 | 0.495 | -0.711 |
| BXD011 | -0.021 | -0.579 |
| BXD03 | 0.093 | -0.615 |
| BXD04 | -0.511 | -0.686 |
| BXD05 | 1.146 | -0.085 |
| BXD06 | 0.218 | -0.741 |
| BXD07 | -0.015 | -0.63 |
| BXD08 | 0.065 | -0.605 |
| BXD09 | 0.293 | -0.639 |
| CAST | -1.086 | -0.302 |
| CCcont | 0.127 | -0.303 |
| DS01 | 0.84 | -0.31 |
| DS02 | 1.084 | 0.369 |
| DS04 | 2.195 | 1.151 |
| DS0c | 0.343 | 0.251 |
| GP01 | 3.083 | -0.548 |
| GP02 | 0.266 | -0.462 |
| GP0c | 1.181 | -0.721 |
| NOD | -1.261 | -0.818 |
| NZO | 1.932 | 0.118 |
| PWK | 0.033 | -0.398 |
| H37Rv_KO_CtpC | 0.683 | 0.359 |
| H37Rv_KO_CtpD | -0.414 | -0.576 |
| H37Rv_KO_Rv1272 | 0.127 | -0.783 |
| H37Rv_KO_SugABC | 0.865 | -0.55 |
| H37Rv_KO_MbtN | 1.546 | 0.415 |
| Trans05 | -0.823 | -0.725 |
| macrophage_unactivated | 1.272 | 0.338 |
| IL1 | 0.724 | -0.341 |
| Rapamycin | -0.853 | -0.353 |
| Tcell | 0.274 | -0.785 |
| GMCSF | -0.671 | -0.636 |
| IFNab | 0.889 | 0.323 |
| IFNg | 0.224 | -0.644 |
| IFNg_GMCSF1 | 1.04 | 0.0 |
| Rv1432_day32 | 0.0 | -0.494 |
| Rv1565c_day32 | -1.657 | -3.527 |
| secA2_input | 0.299 | 0.945 |
| delta_Rv3594 | 0.642 | 1.019 |
| delta_Rv3717 | 0.922 | -0.866 |
| delta_Rv3811 | 0.916 | 1.037 |
| delta_Rv0954 | 0.129 | 0.24 |
| PonA1 | -0.669 | -0.119 |
| EccD1_KO | 0.52 | 0.155 |
| EspI_KO | 0.111 | 0.0 |
| PE35_KO | 1.698 | 0.271 |
| PPE68_KO | 2.262 | 0.298 |
| glycerol2 | 0.193 | -0.202 |
| lignocerate | 1.019 | -0.843 |
| oleate | -2.066 | 0.095 |
| phosphatidylcholine | 0.258 | -0.098 |
| acetate | 0.289 | -0.973 |
| glucAc | 0.333 | -1.106 |
| Rv0950ko | 0.844 | -0.914 |
| Rv1096ko | 1.858 | 1.221 |
| Rv3684ko | 1.611 | 0.924 |
| delta_otsA_trehalose | 0.957 | 0.343 |