Top 10 genes with highest correlation to Rv2662/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2911/dacB2 | (cc=0.4301) | info on Rv2911/dacB2 |
| Rv0516c/- | (cc=0.3774) | info on Rv0516c/- |
| Rv2148c/- | (cc=0.356) | info on Rv2148c/- |
| Rv1477/ripA | (cc=0.3539) | info on Rv1477/ripA |
| Rv3856c/- | (cc=0.3485) | info on Rv3856c/- |
| Rv1527c/pks5 | (cc=0.3478) | info on Rv1527c/pks5 |
| Rv1089/PE10 | (cc=0.3455) | info on Rv1089/PE10 |
| Rv0969/ctpV | (cc=0.3432) | info on Rv0969/ctpV |
| Rv0630c/recB | (cc=0.3416) | info on Rv0630c/recB |
| Rv1961/- | (cc=0.3411) | info on Rv1961/- |
Correlation of Rv2662/- with Rv1089/PE10
Normalized LFCs for Rv2662/-:
(description and provenance of datasets)
| Rv2662/- | Rv1089/PE10 | |
| Fe_supp_jason_reseq | 1.86 | 2.729 |
| low_pH_jason_reseq | -0.547 | -1.549 |
| NO_jason_reseq | -0.05 | 1.467 |
| B6_jason_reseq | -0.057 | 1.672 |
| MHCII_jason_reseq | -1.027 | 2.369 |
| Isoniazid02 | 0.009 | 0.53 |
| Rifampicin4 | -0.068 | 1.633 |
| Ethambutol3 | -0.185 | 3.017 |
| Meropenem3 | -0.165 | 1.224 |
| Vancomycin16 | 0.684 | 0.727 |
| Rv2680_day32 | -0.228 | -0.131 |
| H37Rv_KO_MarP | 0.862 | 1.531 |
| hypoxia_3wks | -0.124 | -0.407 |
| hypoxia_6wks | 0.077 | -1.585 |
| glycerol | -0.161 | 2.092 |
| cholesterol | -0.61 | -0.197 |
| AJ | 0.844 | 1.782 |
| Bibs02 | 0.984 | 1.062 |
| Bibs02c | 0.556 | 0.433 |
| BL6 | 0.161 | -2.751 |
| BL6a | 0.818 | -0.682 |
| BXD01 | -0.368 | -1.73 |
| BXD010 | 0.495 | -1.438 |
| BXD011 | -0.021 | -0.659 |
| BXD03 | 0.093 | -1.087 |
| BXD04 | -0.511 | -0.864 |
| BXD05 | 1.146 | 0.236 |
| BXD06 | 0.218 | -1.403 |
| BXD07 | -0.015 | -2.116 |
| BXD08 | 0.065 | -1.596 |
| BXD09 | 0.293 | -1.091 |
| CAST | -1.086 | 0.617 |
| CCcont | 0.127 | -1.854 |
| DS01 | 0.84 | -0.498 |
| DS02 | 1.084 | -1.218 |
| DS04 | 2.195 | 0.614 |
| DS0c | 0.343 | 0.938 |
| GP01 | 3.083 | 1.922 |
| GP02 | 0.266 | 0.613 |
| GP0c | 1.181 | 2.39 |
| NOD | -1.261 | -1.57 |
| NZO | 1.932 | 1.445 |
| PWK | 0.033 | 0.19 |
| H37Rv_KO_CtpC | 0.683 | -0.268 |
| H37Rv_KO_CtpD | -0.414 | 0.315 |
| H37Rv_KO_Rv1272 | 0.127 | -2.007 |
| H37Rv_KO_SugABC | 0.865 | -1.076 |
| H37Rv_KO_MbtN | 1.546 | -0.43 |
| Trans05 | -0.823 | -0.236 |
| macrophage_unactivated | 1.272 | -1.424 |
| IL1 | 0.724 | -0.676 |
| Rapamycin | -0.853 | -2.756 |
| Tcell | 0.274 | -2.326 |
| GMCSF | -0.671 | -3.137 |
| IFNab | 0.889 | -0.447 |
| IFNg | 0.224 | -0.294 |
| IFNg_GMCSF1 | 1.04 | -2.064 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | -1.657 | 0.0 |
| secA2_input | 0.299 | 1.315 |
| delta_Rv3594 | 0.642 | -0.45 |
| delta_Rv3717 | 0.922 | -0.37 |
| delta_Rv3811 | 0.916 | 0.033 |
| delta_Rv0954 | 0.129 | -0.527 |
| PonA1 | -0.669 | -2.233 |
| EccD1_KO | 0.52 | 1.924 |
| EspI_KO | 0.111 | 0.0 |
| PE35_KO | 1.698 | 3.652 |
| PPE68_KO | 2.262 | 2.62 |
| glycerol2 | 0.193 | 0.27 |
| lignocerate | 1.019 | 0.684 |
| oleate | -2.066 | -1.323 |
| phosphatidylcholine | 0.258 | 0.183 |
| acetate | 0.289 | 0.321 |
| glucAc | 0.333 | -0.405 |
| Rv0950ko | 0.844 | 1.155 |
| Rv1096ko | 1.858 | -0.293 |
| Rv3684ko | 1.611 | 1.333 |
| delta_otsA_trehalose | 0.957 | -1.776 |