Top 10 genes with highest correlation to Rv2578c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3637/- | (cc=0.6252) | info on Rv3637/- |
| Rv1180/pks3 | (cc=0.5142) | info on Rv1180/pks3 |
| Rv0623/vapB30 | (cc=0.5114) | info on Rv0623/vapB30 |
| Rv2615c/PE_PGRS45 | (cc=0.4987) | info on Rv2615c/PE_PGRS45 |
| Rv2631/- | (cc=0.472) | info on Rv2631/- |
| Rv1843c/guaB1 | (cc=0.4622) | info on Rv1843c/guaB1 |
| Rv0139/- | (cc=0.4576) | info on Rv0139/- |
| Rv2741/PE_PGRS47 | (cc=0.4569) | info on Rv2741/PE_PGRS47 |
| Rv3471c/- | (cc=0.4555) | info on Rv3471c/- |
| Rv2032/acg | (cc=0.449) | info on Rv2032/acg |
Correlation of Rv2578c/- with Rv1180/pks3
Normalized LFCs for Rv2578c/-:
(description and provenance of datasets)
| Rv2578c/- | Rv1180/pks3 | |
| Fe_supp_jason_reseq | -0.804 | -0.279 |
| low_pH_jason_reseq | 0.843 | 2.652 |
| NO_jason_reseq | 0.473 | 0.0 |
| B6_jason_reseq | -0.467 | 2.843 |
| MHCII_jason_reseq | 0.441 | 3.318 |
| Isoniazid02 | -0.228 | -0.345 |
| Rifampicin4 | -0.038 | -0.374 |
| Ethambutol3 | 0.0 | 0.176 |
| Meropenem3 | -0.338 | -0.865 |
| Vancomycin16 | 0.21 | 0.225 |
| Rv2680_day32 | 0.382 | -0.493 |
| H37Rv_KO_MarP | 0.281 | 0.415 |
| hypoxia_3wks | 0.116 | -0.319 |
| hypoxia_6wks | -0.092 | 0.234 |
| glycerol | 0.05 | -0.016 |
| cholesterol | -0.193 | 0.163 |
| AJ | -0.165 | 0.356 |
| Bibs02 | -0.257 | -0.254 |
| Bibs02c | -0.164 | 0.646 |
| BL6 | -0.443 | -2.892 |
| BL6a | -0.702 | -0.405 |
| BXD01 | -1.127 | -2.644 |
| BXD010 | -0.713 | -1.603 |
| BXD011 | -0.63 | -2.421 |
| BXD03 | -0.577 | -1.964 |
| BXD04 | -0.612 | -1.702 |
| BXD05 | -0.901 | -1.519 |
| BXD06 | -0.91 | -2.271 |
| BXD07 | -0.578 | -2.302 |
| BXD08 | -0.381 | -2.404 |
| BXD09 | -0.668 | -2.206 |
| CAST | 0.14 | 0.307 |
| CCcont | -1.072 | -2.242 |
| DS01 | -0.152 | 0.371 |
| DS02 | -0.126 | 0.298 |
| DS04 | 0.874 | 0.292 |
| DS0c | -0.055 | 0.093 |
| GP01 | -0.275 | -1.877 |
| GP02 | -0.245 | -1.623 |
| GP0c | -0.825 | -3.264 |
| NOD | -0.465 | -0.194 |
| NZO | 0.526 | 0.069 |
| PWK | 0.307 | 0.374 |
| H37Rv_KO_CtpC | -0.708 | -1.492 |
| H37Rv_KO_CtpD | 0.679 | -2.799 |
| H37Rv_KO_Rv1272 | 0.317 | -2.581 |
| H37Rv_KO_SugABC | -1.454 | -1.747 |
| H37Rv_KO_MbtN | 0.128 | -1.345 |
| Trans05 | -0.374 | -1.761 |
| macrophage_unactivated | -1.881 | -3.27 |
| IL1 | -0.033 | -2.174 |
| Rapamycin | 0.034 | -1.534 |
| Tcell | -1.004 | -3.454 |
| GMCSF | 0.52 | -2.609 |
| IFNab | -0.423 | -2.276 |
| IFNg | -0.714 | -3.175 |
| IFNg_GMCSF1 | -0.289 | -1.518 |
| Rv1432_day32 | 0.141 | 0.411 |
| Rv1565c_day32 | -0.362 | 0.692 |
| secA2_input | 0.564 | 0.944 |
| delta_Rv3594 | 0.139 | 0.2 |
| delta_Rv3717 | -0.711 | -1.016 |
| delta_Rv3811 | -1.025 | -1.142 |
| delta_Rv0954 | -0.125 | -1.262 |
| PonA1 | -0.723 | 0.077 |
| EccD1_KO | 0.398 | 1.457 |
| EspI_KO | 0.918 | -0.106 |
| PE35_KO | -0.271 | 0.694 |
| PPE68_KO | 0.442 | 0.557 |
| glycerol2 | -0.622 | -0.684 |
| lignocerate | -0.723 | 0.737 |
| oleate | -0.5 | -0.489 |
| phosphatidylcholine | -0.59 | -0.066 |
| acetate | -0.088 | -0.299 |
| glucAc | -0.172 | -0.016 |
| Rv0950ko | 0.103 | 1.227 |
| Rv1096ko | 0.051 | 0.826 |
| Rv3684ko | 0.056 | 0.419 |
| delta_otsA_trehalose | 0.472 | 0.724 |