Top 10 genes with highest correlation to Rv2567/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2569c/- | (cc=0.8688) | info on Rv2569c/- |
| Rv0928/pstS3 | (cc=0.6533) | info on Rv0928/pstS3 |
| Rv0930/pstA1 | (cc=0.6413) | info on Rv0930/pstA1 |
| Rv0929/pstC2 | (cc=0.6336) | info on Rv0929/pstC2 |
| Rv2134c/- | (cc=0.6302) | info on Rv2134c/- |
| Rv0818/- | (cc=0.6158) | info on Rv0818/- |
| Rv0019c/fhaB | (cc=0.6117) | info on Rv0019c/fhaB |
| Rv0820/phoT | (cc=0.5945) | info on Rv0820/phoT |
| Rv2398c/cysW | (cc=0.5913) | info on Rv2398c/cysW |
| Rv3864/espE | (cc=0.5862) | info on Rv3864/espE |
Correlation of Rv2567/- with Rv0928/pstS3
Normalized LFCs for Rv2567/-:
(description and provenance of datasets)
| Rv2567/- | Rv0928/pstS3 | |
| Fe_supp_jason_reseq | -0.955 | -3.391 |
| low_pH_jason_reseq | 3.403 | 1.549 |
| NO_jason_reseq | -0.559 | -3.363 |
| B6_jason_reseq | 0.085 | 0.406 |
| MHCII_jason_reseq | -1.254 | 0.372 |
| Isoniazid02 | 2.357 | 0.156 |
| Rifampicin4 | 0.785 | -4.059 |
| Ethambutol3 | -0.066 | -0.989 |
| Meropenem3 | 0.701 | -2.653 |
| Vancomycin16 | 0.589 | -2.26 |
| Rv2680_day32 | 1.485 | 3.982 |
| H37Rv_KO_MarP | -1.226 | -2.74 |
| hypoxia_3wks | 0.885 | -3.413 |
| hypoxia_6wks | 1.539 | 1.128 |
| glycerol | 1.327 | 4.051 |
| cholesterol | -0.276 | 3.767 |
| AJ | 0.459 | 1.99 |
| Bibs02 | 0.294 | 1.819 |
| Bibs02c | 0.174 | 2.23 |
| BL6 | 0.933 | 5.545 |
| BL6a | 0.781 | 6.0 |
| BXD01 | 1.622 | 6.0 |
| BXD010 | 0.956 | 6.0 |
| BXD011 | 1.818 | 6.0 |
| BXD03 | 1.341 | 5.608 |
| BXD04 | 2.213 | 6.0 |
| BXD05 | 1.114 | 6.0 |
| BXD06 | 2.234 | 6.0 |
| BXD07 | 0.809 | 6.0 |
| BXD08 | 1.448 | 6.0 |
| BXD09 | 0.89 | 6.0 |
| CAST | 0.455 | 2.334 |
| CCcont | 1.82 | 3.228 |
| DS01 | 0.291 | 0.0 |
| DS02 | 0.792 | 0.101 |
| DS04 | 1.134 | 2.0 |
| DS0c | 0.506 | 1.053 |
| GP01 | 0.855 | 5.887 |
| GP02 | 0.797 | 5.592 |
| GP0c | 1.102 | 6.0 |
| NOD | 0.277 | 0.649 |
| NZO | 0.533 | 2.227 |
| PWK | 1.242 | 4.575 |
| H37Rv_KO_CtpC | 0.0 | 3.13 |
| H37Rv_KO_CtpD | 0.608 | 1.414 |
| H37Rv_KO_Rv1272 | 0.469 | 4.357 |
| H37Rv_KO_SugABC | 0.231 | 3.955 |
| H37Rv_KO_MbtN | 2.453 | 6.0 |
| Trans05 | 1.132 | 5.513 |
| macrophage_unactivated | 0.0 | -2.632 |
| IL1 | 0.0 | -3.073 |
| Rapamycin | -0.285 | -3.492 |
| Tcell | 0.42 | -2.47 |
| GMCSF | 0.0 | -3.11 |
| IFNab | 0.39 | 2.618 |
| IFNg | -0.951 | -5.161 |
| IFNg_GMCSF1 | -1.7 | -4.672 |
| Rv1432_day32 | 0.888 | 6.0 |
| Rv1565c_day32 | -1.2 | -0.314 |
| secA2_input | -1.42 | -1.969 |
| delta_Rv3594 | -0.073 | -0.055 |
| delta_Rv3717 | 0.863 | 2.024 |
| delta_Rv3811 | -0.354 | 0.581 |
| delta_Rv0954 | -1.507 | -3.635 |
| PonA1 | -0.34 | -3.624 |
| EccD1_KO | -0.48 | -2.447 |
| EspI_KO | -0.596 | -1.258 |
| PE35_KO | -0.516 | -0.557 |
| PPE68_KO | -0.275 | -1.51 |
| glycerol2 | -1.611 | -4.89 |
| lignocerate | -0.267 | -1.422 |
| oleate | -0.56 | -3.927 |
| phosphatidylcholine | -0.966 | -2.553 |
| acetate | 0.961 | -0.17 |
| glucAc | 0.693 | -0.089 |
| Rv0950ko | 0.166 | -3.986 |
| Rv1096ko | 0.166 | 1.674 |
| Rv3684ko | -0.488 | 0.082 |
| delta_otsA_trehalose | 1.209 | -0.532 |