Top 10 genes with highest correlation to Rv2516c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1512/epiA | (cc=0.6223) | info on Rv1512/epiA |
| Rv1908c/katG | (cc=0.5588) | info on Rv1908c/katG |
| Rv2224c/caeA | (cc=0.5513) | info on Rv2224c/caeA |
| Rv1701/- | (cc=0.5484) | info on Rv1701/- |
| Rv3025c/iscS | (cc=0.5438) | info on Rv3025c/iscS |
| Rv2373c/dnaJ2 | (cc=0.5198) | info on Rv2373c/dnaJ2 |
| Rv3715c/recR | (cc=0.519) | info on Rv3715c/recR |
| Rv2594c/ruvC | (cc=0.518) | info on Rv2594c/ruvC |
| Rv0007/- | (cc=0.5076) | info on Rv0007/- |
| Rv2869c/rip | (cc=0.4977) | info on Rv2869c/rip |
Correlation of Rv2516c/- with Rv3715c/recR
Normalized LFCs for Rv2516c/-:
(description and provenance of datasets)
| Rv2516c/- | Rv3715c/recR | |
| Fe_supp_jason_reseq | 0.991 | 2.883 |
| low_pH_jason_reseq | 0.0 | 0.0 |
| NO_jason_reseq | -0.362 | -1.993 |
| B6_jason_reseq | -0.153 | -0.413 |
| MHCII_jason_reseq | 0.0 | -0.283 |
| Isoniazid02 | -0.551 | 0.987 |
| Rifampicin4 | -2.708 | -0.357 |
| Ethambutol3 | -0.851 | 0.574 |
| Meropenem3 | -1.336 | 0.223 |
| Vancomycin16 | -0.639 | -0.976 |
| Rv2680_day32 | 0.0 | -0.642 |
| H37Rv_KO_MarP | -0.92 | -1.411 |
| hypoxia_3wks | -1.132 | -0.522 |
| hypoxia_6wks | -1.167 | -0.576 |
| glycerol | 0.0 | 1.537 |
| cholesterol | -0.145 | 0.463 |
| AJ | -0.232 | 0.324 |
| Bibs02 | -0.183 | 0.371 |
| Bibs02c | -0.209 | -0.527 |
| BL6 | -0.125 | 0.649 |
| BL6a | -0.198 | 0.0 |
| BXD01 | -0.13 | 0.79 |
| BXD010 | 0.323 | 0.722 |
| BXD011 | -0.127 | 0.0 |
| BXD03 | -0.135 | 1.448 |
| BXD04 | -0.124 | 0.395 |
| BXD05 | 0.235 | 0.502 |
| BXD06 | -0.133 | 0.566 |
| BXD07 | -0.138 | 1.445 |
| BXD08 | -0.133 | 1.351 |
| BXD09 | -0.14 | 0.285 |
| CAST | -0.23 | -0.809 |
| CCcont | 2.595 | 2.556 |
| DS01 | 0.0 | 0.171 |
| DS02 | -0.217 | -0.764 |
| DS04 | -0.194 | 0.394 |
| DS0c | -0.217 | 0.157 |
| GP01 | -0.099 | 1.484 |
| GP02 | -0.083 | 0.06 |
| GP0c | -0.13 | 0.893 |
| NOD | -0.225 | -0.566 |
| NZO | -0.199 | 1.124 |
| PWK | -0.196 | -0.494 |
| H37Rv_KO_CtpC | -0.162 | 2.019 |
| H37Rv_KO_CtpD | -0.127 | 0.537 |
| H37Rv_KO_Rv1272 | -0.141 | -0.495 |
| H37Rv_KO_SugABC | -0.099 | 1.605 |
| H37Rv_KO_MbtN | -0.103 | 0.487 |
| Trans05 | -0.131 | 0.344 |
| macrophage_unactivated | -1.146 | 0.669 |
| IL1 | -0.685 | -1.011 |
| Rapamycin | -0.709 | -0.491 |
| Tcell | -1.906 | 1.098 |
| GMCSF | 0.0 | -1.444 |
| IFNab | 0.741 | -0.236 |
| IFNg | 0.275 | -0.911 |
| IFNg_GMCSF1 | -0.726 | -0.779 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | 0.0 | -0.766 |
| secA2_input | 0.504 | 0.994 |
| delta_Rv3594 | 0.895 | 0.961 |
| delta_Rv3717 | 0.736 | 0.257 |
| delta_Rv3811 | 1.328 | 0.934 |
| delta_Rv0954 | 1.541 | 1.145 |
| PonA1 | -0.56 | 0.145 |
| EccD1_KO | -2.611 | -1.786 |
| EspI_KO | -1.748 | -2.772 |
| PE35_KO | -0.898 | -0.817 |
| PPE68_KO | -0.771 | -1.805 |
| glycerol2 | -1.113 | -2.434 |
| lignocerate | -0.746 | -2.02 |
| oleate | -1.955 | -1.961 |
| phosphatidylcholine | -0.859 | -2.027 |
| acetate | 0.422 | -0.166 |
| glucAc | 0.526 | 0.605 |
| Rv0950ko | 0.669 | -0.926 |
| Rv1096ko | 2.075 | 0.507 |
| Rv3684ko | 0.498 | 1.094 |
| delta_otsA_trehalose | 0.254 | 0.83 |